Hb_007507_030

Information

Type -
Description -
Location Contig7507: 8218-10164
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007507_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_101778_010 0.0294450179 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_062503_010 0.0765900583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_042141_010 0.0855031317 - - -
5 Hb_005183_060 0.0976386548 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
6 Hb_000224_250 0.1402297614 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
7 Hb_063869_010 0.1410531531 - - JHL22C18.10 [Jatropha curcas]
8 Hb_002876_010 0.147085827 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_137701_020 0.154860061 - - putative protein kinase [Oryza sativa Japonica Group]
10 Hb_000103_380 0.1624358033 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
11 Hb_008225_020 0.1759877079 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
12 Hb_000832_360 0.179258794 - - -
13 Hb_001205_170 0.1799641282 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
14 Hb_001105_140 0.1861413752 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
15 Hb_004880_120 0.1907748539 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
16 Hb_005736_080 0.1911180683 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_141990_030 0.193782434 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
18 Hb_052764_010 0.1951205517 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
19 Hb_045785_010 0.1975856984 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_006043_030 0.1999744897 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_007507_030 Hb_007507_030 Hb_101778_010 Hb_101778_010 Hb_007507_030--Hb_101778_010 Hb_062503_010 Hb_062503_010 Hb_007507_030--Hb_062503_010 Hb_042141_010 Hb_042141_010 Hb_007507_030--Hb_042141_010 Hb_005183_060 Hb_005183_060 Hb_007507_030--Hb_005183_060 Hb_000224_250 Hb_000224_250 Hb_007507_030--Hb_000224_250 Hb_063869_010 Hb_063869_010 Hb_007507_030--Hb_063869_010 Hb_101778_010--Hb_062503_010 Hb_101778_010--Hb_005183_060 Hb_101778_010--Hb_000224_250 Hb_101778_010--Hb_042141_010 Hb_002876_010 Hb_002876_010 Hb_101778_010--Hb_002876_010 Hb_062503_010--Hb_005183_060 Hb_062503_010--Hb_002876_010 Hb_000103_380 Hb_000103_380 Hb_062503_010--Hb_000103_380 Hb_062503_010--Hb_000224_250 Hb_042141_010--Hb_063869_010 Hb_052764_010 Hb_052764_010 Hb_042141_010--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_042141_010--Hb_000205_220 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_002876_010 Hb_000224_250--Hb_002876_010 Hb_001105_140 Hb_001105_140 Hb_000224_250--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_000224_250--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000224_250--Hb_141990_030 Hb_000224_250--Hb_000103_380 Hb_063869_010--Hb_137701_020 Hb_063869_010--Hb_000205_220 Hb_063869_010--Hb_052764_010 Hb_004880_120 Hb_004880_120 Hb_063869_010--Hb_004880_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0335934 0.00887149 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0449233

CAGE analysis