Hb_000224_250

Information

Type -
Description -
Location Contig224: 230092-231366
Sequence    

Annotation

kegg
ID atr:s05400p00003230
description AMTR_s05400p00003230; hypothetical protein
nr
ID ERN04997.1
description hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
swissprot
ID P92543
description Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1
trembl
ID U5D0V6
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s05400p00003230 PE=4 SV=1
Gene Ontology
ID GO:0005739
description orf448

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_250 0.0 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
2 Hb_002876_010 0.0246160898 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_001105_140 0.0722043148 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
4 Hb_005736_080 0.0728950701 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_141990_030 0.0735383514 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
6 Hb_000103_380 0.0798961479 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
7 Hb_062503_010 0.0868529128 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003058_160 0.097897792 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004924_040 0.0979905523 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
10 Hb_073467_010 0.1035519213 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_101778_010 0.1118454968 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000832_360 0.1139998697 - - -
13 Hb_005183_060 0.1283527251 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
14 Hb_001761_160 0.1372931408 - - hypothetical protein VITISV_019364 [Vitis vinifera]
15 Hb_007507_030 0.1402297614 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_147069_010 0.1495629118 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
17 Hb_008225_020 0.1645582136 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
18 Hb_003414_020 0.1716003458 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
19 Hb_004951_030 0.1716958874 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
20 Hb_045785_010 0.1733795754 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_000224_250 Hb_000224_250 Hb_002876_010 Hb_002876_010 Hb_000224_250--Hb_002876_010 Hb_001105_140 Hb_001105_140 Hb_000224_250--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_000224_250--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000224_250--Hb_141990_030 Hb_000103_380 Hb_000103_380 Hb_000224_250--Hb_000103_380 Hb_062503_010 Hb_062503_010 Hb_000224_250--Hb_062503_010 Hb_002876_010--Hb_001105_140 Hb_002876_010--Hb_005736_080 Hb_002876_010--Hb_141990_030 Hb_002876_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_002876_010--Hb_003058_160 Hb_001105_140--Hb_005736_080 Hb_001105_140--Hb_141990_030 Hb_001105_140--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_001105_140--Hb_004924_040 Hb_001105_140--Hb_000103_380 Hb_073467_010 Hb_073467_010 Hb_001105_140--Hb_073467_010 Hb_005736_080--Hb_141990_030 Hb_005736_080--Hb_003058_160 Hb_005736_080--Hb_004924_040 Hb_005736_080--Hb_073467_010 Hb_005736_080--Hb_000103_380 Hb_141990_030--Hb_003058_160 Hb_141990_030--Hb_004924_040 Hb_141990_030--Hb_073467_010 Hb_141990_030--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_000103_380--Hb_003058_160 Hb_005183_060 Hb_005183_060 Hb_062503_010--Hb_005183_060 Hb_101778_010 Hb_101778_010 Hb_062503_010--Hb_101778_010 Hb_007507_030 Hb_007507_030 Hb_062503_010--Hb_007507_030 Hb_062503_010--Hb_002876_010 Hb_062503_010--Hb_000103_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.123115 0.0493669 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.344356

CAGE analysis