Hb_004924_040

Information

Type -
Description -
Location Contig4924: 59451-61364
Sequence    

Annotation

kegg
ID tcc:TCM_035772
description DNA/RNA polymerases superfamily protein
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQP6
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_035774 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004924_040 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_003058_160 0.0003510429 - - conserved hypothetical protein [Ricinus communis]
3 Hb_073467_010 0.006397441 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
4 Hb_141990_030 0.0272356299 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
5 Hb_005736_080 0.0298863948 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_001105_140 0.035534433 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
7 Hb_000103_380 0.0703417095 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
8 Hb_002876_010 0.0790933527 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_000832_360 0.0857317834 - - -
10 Hb_000224_250 0.0979905523 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
11 Hb_147069_010 0.1033047293 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
12 Hb_100404_010 0.1210774838 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
13 Hb_001205_050 0.1278446263 - - -
14 Hb_001761_160 0.1349254788 - - hypothetical protein VITISV_019364 [Vitis vinifera]
15 Hb_184798_060 0.1459811053 - - conserved hypothetical protein [Ricinus communis]
16 Hb_062503_010 0.1488199773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_080033_020 0.1633811245 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
18 Hb_005183_060 0.166124387 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
19 Hb_001081_050 0.1677959323 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
20 Hb_000512_050 0.1845696424 - - hypothetical protein VITISV_005640 [Vitis vinifera]

Gene co-expression network

sample Hb_004924_040 Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_004924_040--Hb_003058_160 Hb_073467_010 Hb_073467_010 Hb_004924_040--Hb_073467_010 Hb_141990_030 Hb_141990_030 Hb_004924_040--Hb_141990_030 Hb_005736_080 Hb_005736_080 Hb_004924_040--Hb_005736_080 Hb_001105_140 Hb_001105_140 Hb_004924_040--Hb_001105_140 Hb_000103_380 Hb_000103_380 Hb_004924_040--Hb_000103_380 Hb_003058_160--Hb_073467_010 Hb_003058_160--Hb_141990_030 Hb_003058_160--Hb_005736_080 Hb_003058_160--Hb_001105_140 Hb_003058_160--Hb_000103_380 Hb_073467_010--Hb_141990_030 Hb_073467_010--Hb_005736_080 Hb_073467_010--Hb_001105_140 Hb_073467_010--Hb_000103_380 Hb_141990_030--Hb_005736_080 Hb_141990_030--Hb_001105_140 Hb_141990_030--Hb_000103_380 Hb_005736_080--Hb_001105_140 Hb_005736_080--Hb_000103_380 Hb_001105_140--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0145785 0.0131023 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.065302

CAGE analysis