Hb_000832_360

Information

Type -
Description -
Location Contig832: 302369-303865
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_360 0.0 - - -
2 Hb_000103_380 0.0345515779 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
3 Hb_147069_010 0.0370915679 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
4 Hb_001105_140 0.0634691742 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
5 Hb_001205_050 0.0687211124 - - -
6 Hb_005736_080 0.0700134941 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
7 Hb_141990_030 0.0735102087 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
8 Hb_073467_010 0.0841396183 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
9 Hb_003058_160 0.085382149 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004924_040 0.0857317834 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_100404_010 0.0885041452 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
12 Hb_002876_010 0.0903755207 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_005183_060 0.0974119607 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
14 Hb_062503_010 0.1042729006 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000224_250 0.1139998697 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
16 Hb_101778_010 0.1539817123 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_008225_020 0.1593451886 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
18 Hb_007507_030 0.179258794 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_145331_010 0.1798944201 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
20 Hb_003299_060 0.1869166901 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000832_360 Hb_000832_360 Hb_000103_380 Hb_000103_380 Hb_000832_360--Hb_000103_380 Hb_147069_010 Hb_147069_010 Hb_000832_360--Hb_147069_010 Hb_001105_140 Hb_001105_140 Hb_000832_360--Hb_001105_140 Hb_001205_050 Hb_001205_050 Hb_000832_360--Hb_001205_050 Hb_005736_080 Hb_005736_080 Hb_000832_360--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000832_360--Hb_141990_030 Hb_000103_380--Hb_001105_140 Hb_000103_380--Hb_005736_080 Hb_000103_380--Hb_141990_030 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010 Hb_003058_160 Hb_003058_160 Hb_000103_380--Hb_003058_160 Hb_147069_010--Hb_001205_050 Hb_100404_010 Hb_100404_010 Hb_147069_010--Hb_100404_010 Hb_147069_010--Hb_000103_380 Hb_147069_010--Hb_001105_140 Hb_147069_010--Hb_005736_080 Hb_001105_140--Hb_005736_080 Hb_001105_140--Hb_141990_030 Hb_001105_140--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_001105_140--Hb_004924_040 Hb_073467_010 Hb_073467_010 Hb_001105_140--Hb_073467_010 Hb_001205_050--Hb_100404_010 Hb_001205_050--Hb_000103_380 Hb_001205_050--Hb_001105_140 Hb_001205_050--Hb_073467_010 Hb_005736_080--Hb_141990_030 Hb_005736_080--Hb_003058_160 Hb_005736_080--Hb_004924_040 Hb_005736_080--Hb_073467_010 Hb_141990_030--Hb_003058_160 Hb_141990_030--Hb_004924_040 Hb_141990_030--Hb_073467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0539762 0.0494271 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.159337

CAGE analysis