Hb_147069_010

Information

Type -
Description -
Location Contig147069: 58-498
Sequence    

Annotation

kegg
ID vvi:104877799
description uncharacterized LOC104877799
nr
ID KHG04283.1
description Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147069_010 0.0 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
2 Hb_001205_050 0.0318443765 - - -
3 Hb_000832_360 0.0370915679 - - -
4 Hb_100404_010 0.0551090817 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
5 Hb_000103_380 0.0705672316 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
6 Hb_001105_140 0.0915724442 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
7 Hb_005736_080 0.096790675 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_141990_030 0.0996383942 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
9 Hb_073467_010 0.0996673871 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
10 Hb_003058_160 0.1029816586 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004924_040 0.1033047293 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_005183_060 0.1205459956 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
13 Hb_002876_010 0.1257453063 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_062503_010 0.1370228354 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000224_250 0.1495629118 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
16 Hb_145331_010 0.158850704 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
17 Hb_002977_020 0.1724743663 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
18 Hb_008225_020 0.1767483321 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
19 Hb_000334_010 0.1788179633 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
20 Hb_003299_060 0.1806115887 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_147069_010 Hb_147069_010 Hb_001205_050 Hb_001205_050 Hb_147069_010--Hb_001205_050 Hb_000832_360 Hb_000832_360 Hb_147069_010--Hb_000832_360 Hb_100404_010 Hb_100404_010 Hb_147069_010--Hb_100404_010 Hb_000103_380 Hb_000103_380 Hb_147069_010--Hb_000103_380 Hb_001105_140 Hb_001105_140 Hb_147069_010--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_147069_010--Hb_005736_080 Hb_001205_050--Hb_100404_010 Hb_001205_050--Hb_000832_360 Hb_001205_050--Hb_000103_380 Hb_001205_050--Hb_001105_140 Hb_073467_010 Hb_073467_010 Hb_001205_050--Hb_073467_010 Hb_000832_360--Hb_000103_380 Hb_000832_360--Hb_001105_140 Hb_000832_360--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000832_360--Hb_141990_030 Hb_100404_010--Hb_000832_360 Hb_100404_010--Hb_073467_010 Hb_100404_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_100404_010--Hb_003058_160 Hb_000103_380--Hb_001105_140 Hb_000103_380--Hb_005736_080 Hb_000103_380--Hb_141990_030 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010 Hb_000103_380--Hb_003058_160 Hb_001105_140--Hb_005736_080 Hb_001105_140--Hb_141990_030 Hb_001105_140--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_001105_140--Hb_004924_040 Hb_001105_140--Hb_073467_010 Hb_005736_080--Hb_141990_030 Hb_005736_080--Hb_003058_160 Hb_005736_080--Hb_004924_040 Hb_005736_080--Hb_073467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148214 0.176522 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.473417

CAGE analysis