Hb_073467_010

Information

Type -
Description -
Location Contig73467: 2452-8317
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012072702.1
description PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073467_010 0.0 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
2 Hb_003058_160 0.0063203328 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004924_040 0.006397441 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_141990_030 0.0316023912 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
5 Hb_005736_080 0.0337774506 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_001105_140 0.0386388987 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
7 Hb_000103_380 0.0713336138 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
8 Hb_002876_010 0.0840739465 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_000832_360 0.0841396183 - - -
10 Hb_147069_010 0.0996673871 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
11 Hb_000224_250 0.1035519213 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
12 Hb_100404_010 0.1154585636 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
13 Hb_001205_050 0.1233490927 - - -
14 Hb_001761_160 0.1397164073 - - hypothetical protein VITISV_019364 [Vitis vinifera]
15 Hb_184798_060 0.1474735082 - - conserved hypothetical protein [Ricinus communis]
16 Hb_062503_010 0.1517221872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_080033_020 0.1622245637 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
18 Hb_001081_050 0.166982542 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
19 Hb_005183_060 0.1672751324 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
20 Hb_000512_050 0.185744647 - - hypothetical protein VITISV_005640 [Vitis vinifera]

Gene co-expression network

sample Hb_073467_010 Hb_073467_010 Hb_003058_160 Hb_003058_160 Hb_073467_010--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_073467_010--Hb_004924_040 Hb_141990_030 Hb_141990_030 Hb_073467_010--Hb_141990_030 Hb_005736_080 Hb_005736_080 Hb_073467_010--Hb_005736_080 Hb_001105_140 Hb_001105_140 Hb_073467_010--Hb_001105_140 Hb_000103_380 Hb_000103_380 Hb_073467_010--Hb_000103_380 Hb_003058_160--Hb_004924_040 Hb_003058_160--Hb_141990_030 Hb_003058_160--Hb_005736_080 Hb_003058_160--Hb_001105_140 Hb_003058_160--Hb_000103_380 Hb_004924_040--Hb_141990_030 Hb_004924_040--Hb_005736_080 Hb_004924_040--Hb_001105_140 Hb_004924_040--Hb_000103_380 Hb_141990_030--Hb_005736_080 Hb_141990_030--Hb_001105_140 Hb_141990_030--Hb_000103_380 Hb_005736_080--Hb_001105_140 Hb_005736_080--Hb_000103_380 Hb_001105_140--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_002876_010 Hb_002876_010 Hb_000103_380--Hb_002876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0192727 0.0182687 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0878042

CAGE analysis