Hb_002876_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig2876: 8964-9373
Sequence    

Annotation

kegg
ID rcu:RCOM_1594410
description DNA binding protein, putative
nr
ID XP_002510392.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q58FS3
description Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1
trembl
ID B9R7U9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1594410 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_010 0.0 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
2 Hb_000224_250 0.0246160898 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
3 Hb_001105_140 0.0494637392 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
4 Hb_005736_080 0.0514025929 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_141990_030 0.0527922136 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
6 Hb_000103_380 0.0560031153 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
7 Hb_003058_160 0.0789424751 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004924_040 0.0790933527 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_062503_010 0.0830384402 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_073467_010 0.0840739465 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_000832_360 0.0903755207 - - -
12 Hb_005183_060 0.1177886546 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
13 Hb_101778_010 0.1179188549 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_147069_010 0.1257453063 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
15 Hb_001761_160 0.1446475966 - - hypothetical protein VITISV_019364 [Vitis vinifera]
16 Hb_007507_030 0.147085827 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_001205_050 0.1570125571 - - -
18 Hb_008225_020 0.1587292708 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
19 Hb_100404_010 0.1681609494 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
20 Hb_004951_030 0.1752574876 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002876_010 Hb_002876_010 Hb_000224_250 Hb_000224_250 Hb_002876_010--Hb_000224_250 Hb_001105_140 Hb_001105_140 Hb_002876_010--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_002876_010--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_002876_010--Hb_141990_030 Hb_000103_380 Hb_000103_380 Hb_002876_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_002876_010--Hb_003058_160 Hb_000224_250--Hb_001105_140 Hb_000224_250--Hb_005736_080 Hb_000224_250--Hb_141990_030 Hb_000224_250--Hb_000103_380 Hb_062503_010 Hb_062503_010 Hb_000224_250--Hb_062503_010 Hb_001105_140--Hb_005736_080 Hb_001105_140--Hb_141990_030 Hb_001105_140--Hb_003058_160 Hb_004924_040 Hb_004924_040 Hb_001105_140--Hb_004924_040 Hb_001105_140--Hb_000103_380 Hb_073467_010 Hb_073467_010 Hb_001105_140--Hb_073467_010 Hb_005736_080--Hb_141990_030 Hb_005736_080--Hb_003058_160 Hb_005736_080--Hb_004924_040 Hb_005736_080--Hb_073467_010 Hb_005736_080--Hb_000103_380 Hb_141990_030--Hb_003058_160 Hb_141990_030--Hb_004924_040 Hb_141990_030--Hb_073467_010 Hb_141990_030--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_000103_380--Hb_000832_360 Hb_000103_380--Hb_003058_160 Hb_003058_160--Hb_004924_040 Hb_003058_160--Hb_073467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346661 0.171829 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.00962

CAGE analysis