Hb_062503_010

Information

Type -
Description -
Location Contig62503: 163-1123
Sequence    

Annotation

kegg
ID rcu:RCOM_1186860
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74 2.7.12.1)
nr
ID XP_002527461.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SN92
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1186860 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062503_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_005183_060 0.048801805 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
3 Hb_101778_010 0.050147905 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007507_030 0.0765900583 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_002876_010 0.0830384402 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
6 Hb_000103_380 0.0866240979 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
7 Hb_000224_250 0.0868529128 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
8 Hb_000832_360 0.1042729006 - - -
9 Hb_001105_140 0.1137131933 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
10 Hb_005736_080 0.1195207646 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_141990_030 0.1226301932 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
12 Hb_147069_010 0.1370228354 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
13 Hb_008225_020 0.144484623 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
14 Hb_003058_160 0.1485578617 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004924_040 0.1488199773 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_073467_010 0.1517221872 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
17 Hb_042141_010 0.159025737 - - -
18 Hb_001205_050 0.1646781845 - - -
19 Hb_137701_020 0.1664782475 - - putative protein kinase [Oryza sativa Japonica Group]
20 Hb_063869_010 0.1871881665 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_062503_010 Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_062503_010--Hb_005183_060 Hb_101778_010 Hb_101778_010 Hb_062503_010--Hb_101778_010 Hb_007507_030 Hb_007507_030 Hb_062503_010--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_062503_010--Hb_002876_010 Hb_000103_380 Hb_000103_380 Hb_062503_010--Hb_000103_380 Hb_000224_250 Hb_000224_250 Hb_062503_010--Hb_000224_250 Hb_005183_060--Hb_101778_010 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_007507_030 Hb_005183_060--Hb_002876_010 Hb_101778_010--Hb_007507_030 Hb_101778_010--Hb_000224_250 Hb_042141_010 Hb_042141_010 Hb_101778_010--Hb_042141_010 Hb_101778_010--Hb_002876_010 Hb_007507_030--Hb_042141_010 Hb_007507_030--Hb_000224_250 Hb_063869_010 Hb_063869_010 Hb_007507_030--Hb_063869_010 Hb_002876_010--Hb_000224_250 Hb_001105_140 Hb_001105_140 Hb_002876_010--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_002876_010--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_002876_010--Hb_141990_030 Hb_002876_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_002876_010--Hb_003058_160 Hb_000103_380--Hb_000832_360 Hb_000103_380--Hb_001105_140 Hb_000103_380--Hb_005736_080 Hb_000103_380--Hb_141990_030 Hb_000103_380--Hb_003058_160 Hb_000224_250--Hb_001105_140 Hb_000224_250--Hb_005736_080 Hb_000224_250--Hb_141990_030 Hb_000224_250--Hb_000103_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0839112 0.0363203 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.157758

CAGE analysis