Hb_101778_010

Information

Type -
Description -
Location Contig101778: 7312-15411
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101778_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007507_030 0.0294450179 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_062503_010 0.050147905 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005183_060 0.0819398947 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
5 Hb_000224_250 0.1118454968 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
6 Hb_042141_010 0.1148398003 - - -
7 Hb_002876_010 0.1179188549 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_000103_380 0.1348518299 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
9 Hb_000832_360 0.1539817123 - - -
10 Hb_001105_140 0.1573833938 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
11 Hb_008225_020 0.1621527598 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
12 Hb_005736_080 0.1622769838 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_063869_010 0.163536065 - - JHL22C18.10 [Jatropha curcas]
14 Hb_141990_030 0.1649108959 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
15 Hb_137701_020 0.1651437278 - - putative protein kinase [Oryza sativa Japonica Group]
16 Hb_147069_010 0.186115857 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
17 Hb_045785_010 0.187607656 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_001205_170 0.1881530422 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
19 Hb_003058_160 0.1913144407 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004924_040 0.1915376305 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_101778_010 Hb_101778_010 Hb_007507_030 Hb_007507_030 Hb_101778_010--Hb_007507_030 Hb_062503_010 Hb_062503_010 Hb_101778_010--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_101778_010--Hb_005183_060 Hb_000224_250 Hb_000224_250 Hb_101778_010--Hb_000224_250 Hb_042141_010 Hb_042141_010 Hb_101778_010--Hb_042141_010 Hb_002876_010 Hb_002876_010 Hb_101778_010--Hb_002876_010 Hb_007507_030--Hb_062503_010 Hb_007507_030--Hb_042141_010 Hb_007507_030--Hb_005183_060 Hb_007507_030--Hb_000224_250 Hb_063869_010 Hb_063869_010 Hb_007507_030--Hb_063869_010 Hb_062503_010--Hb_005183_060 Hb_062503_010--Hb_002876_010 Hb_000103_380 Hb_000103_380 Hb_062503_010--Hb_000103_380 Hb_062503_010--Hb_000224_250 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_002876_010 Hb_000224_250--Hb_002876_010 Hb_001105_140 Hb_001105_140 Hb_000224_250--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_000224_250--Hb_005736_080 Hb_141990_030 Hb_141990_030 Hb_000224_250--Hb_141990_030 Hb_000224_250--Hb_000103_380 Hb_042141_010--Hb_063869_010 Hb_052764_010 Hb_052764_010 Hb_042141_010--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_042141_010--Hb_000205_220 Hb_137701_020 Hb_137701_020 Hb_042141_010--Hb_137701_020 Hb_002876_010--Hb_001105_140 Hb_002876_010--Hb_005736_080 Hb_002876_010--Hb_141990_030 Hb_002876_010--Hb_000103_380 Hb_003058_160 Hb_003058_160 Hb_002876_010--Hb_003058_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0122297 0.00366595 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0189364

CAGE analysis