Hb_137701_020

Information

Type -
Description -
Location Contig137701: 3891-4670
Sequence    

Annotation

kegg
ID pop:POPTR_0275s002101
description hypothetical protein
nr
ID AAT01313.1
description putative protein kinase [Oryza sativa Japonica Group]
swissprot
ID A0QNG1
description Serine/threonine-protein kinase PknB OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=pknB PE=1 SV=1
trembl
ID I1PX99
description Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137701_020 0.0 - - putative protein kinase [Oryza sativa Japonica Group]
2 Hb_063869_010 0.0806882042 - - JHL22C18.10 [Jatropha curcas]
3 Hb_004880_120 0.1276151527 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
4 Hb_005183_060 0.1279303998 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
5 Hb_004176_090 0.1307269919 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_042141_010 0.1545786632 - - -
7 Hb_007507_030 0.154860061 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_145331_010 0.1590978794 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
9 Hb_101778_010 0.1651437278 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_062503_010 0.1664782475 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000230_250 0.1811720003 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
12 Hb_012807_070 0.1873107181 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
13 Hb_005772_020 0.1874512085 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
14 Hb_000205_220 0.1896779132 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
15 Hb_017098_020 0.1936961708 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_052764_010 0.2001864563 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
17 Hb_010175_050 0.2034548925 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
18 Hb_000832_360 0.2105392086 - - -
19 Hb_005240_010 0.2152198397 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
20 Hb_147069_010 0.218069976 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]

Gene co-expression network

sample Hb_137701_020 Hb_137701_020 Hb_063869_010 Hb_063869_010 Hb_137701_020--Hb_063869_010 Hb_004880_120 Hb_004880_120 Hb_137701_020--Hb_004880_120 Hb_005183_060 Hb_005183_060 Hb_137701_020--Hb_005183_060 Hb_004176_090 Hb_004176_090 Hb_137701_020--Hb_004176_090 Hb_042141_010 Hb_042141_010 Hb_137701_020--Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_137701_020--Hb_007507_030 Hb_063869_010--Hb_042141_010 Hb_000205_220 Hb_000205_220 Hb_063869_010--Hb_000205_220 Hb_052764_010 Hb_052764_010 Hb_063869_010--Hb_052764_010 Hb_063869_010--Hb_007507_030 Hb_063869_010--Hb_004880_120 Hb_000230_250 Hb_000230_250 Hb_004880_120--Hb_000230_250 Hb_010175_050 Hb_010175_050 Hb_004880_120--Hb_010175_050 Hb_005772_020 Hb_005772_020 Hb_004880_120--Hb_005772_020 Hb_004007_210 Hb_004007_210 Hb_004880_120--Hb_004007_210 Hb_062503_010 Hb_062503_010 Hb_005183_060--Hb_062503_010 Hb_101778_010 Hb_101778_010 Hb_005183_060--Hb_101778_010 Hb_000103_380 Hb_000103_380 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_005183_060--Hb_002876_010 Hb_145331_010 Hb_145331_010 Hb_004176_090--Hb_145331_010 Hb_001021_020 Hb_001021_020 Hb_004176_090--Hb_001021_020 Hb_001205_050 Hb_001205_050 Hb_004176_090--Hb_001205_050 Hb_131719_010 Hb_131719_010 Hb_004176_090--Hb_131719_010 Hb_004176_090--Hb_005183_060 Hb_042141_010--Hb_007507_030 Hb_042141_010--Hb_052764_010 Hb_042141_010--Hb_101778_010 Hb_042141_010--Hb_000205_220 Hb_007507_030--Hb_101778_010 Hb_007507_030--Hb_062503_010 Hb_000224_250 Hb_000224_250 Hb_007507_030--Hb_000224_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.453472 0.246569 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.422071

CAGE analysis