Hb_145331_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig145331: 2125-3060
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07690g
description POPTRDRAFT_576564; hypothetical protein
nr
ID XP_002323414.1
description hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
swissprot
ID Q9M290
description Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1
trembl
ID B9IIS2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s07690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145331_010 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
2 Hb_004176_090 0.0379114066 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
3 Hb_001021_020 0.1176351128 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
4 Hb_001205_050 0.1416492233 - - -
5 Hb_000189_460 0.1441238618 - - -
6 Hb_002977_020 0.1530143638 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
7 Hb_147069_010 0.158850704 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
8 Hb_137701_020 0.1590978794 - - putative protein kinase [Oryza sativa Japonica Group]
9 Hb_131719_010 0.1683852786 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
10 Hb_100404_010 0.1703951308 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
11 Hb_005183_060 0.1738277023 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
12 Hb_001040_090 0.1780015264 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
13 Hb_000832_360 0.1798944201 - - -
14 Hb_003349_020 0.1981982987 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
15 Hb_008887_030 0.2050918119 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
16 Hb_001953_110 0.2054840226 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
17 Hb_004880_120 0.2062592297 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
18 Hb_000160_080 0.208335497 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
19 Hb_000103_380 0.2096974627 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
20 Hb_000834_170 0.2113883102 - - polygalacturonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_145331_010 Hb_145331_010 Hb_004176_090 Hb_004176_090 Hb_145331_010--Hb_004176_090 Hb_001021_020 Hb_001021_020 Hb_145331_010--Hb_001021_020 Hb_001205_050 Hb_001205_050 Hb_145331_010--Hb_001205_050 Hb_000189_460 Hb_000189_460 Hb_145331_010--Hb_000189_460 Hb_002977_020 Hb_002977_020 Hb_145331_010--Hb_002977_020 Hb_147069_010 Hb_147069_010 Hb_145331_010--Hb_147069_010 Hb_137701_020 Hb_137701_020 Hb_004176_090--Hb_137701_020 Hb_004176_090--Hb_001021_020 Hb_004176_090--Hb_001205_050 Hb_131719_010 Hb_131719_010 Hb_004176_090--Hb_131719_010 Hb_005183_060 Hb_005183_060 Hb_004176_090--Hb_005183_060 Hb_001021_020--Hb_000189_460 Hb_001021_020--Hb_002977_020 Hb_001242_030 Hb_001242_030 Hb_001021_020--Hb_001242_030 Hb_011900_030 Hb_011900_030 Hb_001021_020--Hb_011900_030 Hb_011930_060 Hb_011930_060 Hb_001021_020--Hb_011930_060 Hb_001205_050--Hb_147069_010 Hb_100404_010 Hb_100404_010 Hb_001205_050--Hb_100404_010 Hb_000832_360 Hb_000832_360 Hb_001205_050--Hb_000832_360 Hb_000103_380 Hb_000103_380 Hb_001205_050--Hb_000103_380 Hb_001105_140 Hb_001105_140 Hb_001205_050--Hb_001105_140 Hb_073467_010 Hb_073467_010 Hb_001205_050--Hb_073467_010 Hb_000189_460--Hb_002977_020 Hb_000189_460--Hb_011900_030 Hb_000189_460--Hb_001242_030 Hb_000189_460--Hb_011930_060 Hb_002977_020--Hb_001242_030 Hb_002977_020--Hb_011930_060 Hb_002977_020--Hb_011900_030 Hb_002977_020--Hb_100404_010 Hb_147069_010--Hb_000832_360 Hb_147069_010--Hb_100404_010 Hb_147069_010--Hb_000103_380 Hb_147069_010--Hb_001105_140 Hb_005736_080 Hb_005736_080 Hb_147069_010--Hb_005736_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.226865 0.322628 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.380495

CAGE analysis