Hb_131719_010

Information

Type -
Description -
Location Contig131719: 5447-7370
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID GO:0005488
description dna-directed rna polymerase i subunit rpa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131719_010 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_001040_090 0.1181821747 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
3 Hb_001953_110 0.1203363792 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
4 Hb_003349_020 0.1461254945 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
5 Hb_003970_010 0.1541877697 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
6 Hb_002818_160 0.1576100959 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
7 Hb_135714_010 0.1585835398 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
8 Hb_002307_120 0.1605939146 - - scab resistance family protein [Populus trichocarpa]
9 Hb_023904_010 0.1608290009 - - -
10 Hb_145331_010 0.1683852786 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
11 Hb_008887_030 0.1684611157 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
12 Hb_005227_030 0.1684637174 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
13 Hb_004176_090 0.1705491645 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
14 Hb_001631_110 0.1725031553 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
15 Hb_000160_080 0.1751459734 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
16 Hb_010904_010 0.1760026021 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
17 Hb_004109_270 0.1772680715 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
18 Hb_000230_250 0.1778409553 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
19 Hb_000834_170 0.1811452801 - - polygalacturonase, putative [Ricinus communis]
20 Hb_000340_380 0.1823796963 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]

Gene co-expression network

sample Hb_131719_010 Hb_131719_010 Hb_001040_090 Hb_001040_090 Hb_131719_010--Hb_001040_090 Hb_001953_110 Hb_001953_110 Hb_131719_010--Hb_001953_110 Hb_003349_020 Hb_003349_020 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_002818_160 Hb_002818_160 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_001040_090--Hb_001953_110 Hb_000039_190 Hb_000039_190 Hb_001040_090--Hb_000039_190 Hb_001040_090--Hb_003349_020 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_023904_010 Hb_023904_010 Hb_001040_090--Hb_023904_010 Hb_001953_110--Hb_023904_010 Hb_005227_030 Hb_005227_030 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_001953_110--Hb_002818_160 Hb_003349_020--Hb_023904_010 Hb_003349_020--Hb_135714_010 Hb_003349_020--Hb_001953_110 Hb_031685_010 Hb_031685_010 Hb_003349_020--Hb_031685_010 Hb_002211_020 Hb_002211_020 Hb_003970_010--Hb_002211_020 Hb_003970_010--Hb_010904_010 Hb_000031_320 Hb_000031_320 Hb_003970_010--Hb_000031_320 Hb_008202_010 Hb_008202_010 Hb_003970_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_003970_010--Hb_000110_040 Hb_046739_010 Hb_046739_010 Hb_003970_010--Hb_046739_010 Hb_002307_120 Hb_002307_120 Hb_002818_160--Hb_002307_120 Hb_003767_060 Hb_003767_060 Hb_002818_160--Hb_003767_060 Hb_002818_160--Hb_000031_320 Hb_000186_180 Hb_000186_180 Hb_002818_160--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_002818_160--Hb_003209_150 Hb_003654_020 Hb_003654_020 Hb_002818_160--Hb_003654_020 Hb_005888_050 Hb_005888_050 Hb_135714_010--Hb_005888_050 Hb_135714_010--Hb_008202_010 Hb_074966_010 Hb_074966_010 Hb_135714_010--Hb_074966_010 Hb_135714_010--Hb_005227_030 Hb_135714_010--Hb_031685_010 Hb_000343_050 Hb_000343_050 Hb_135714_010--Hb_000343_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.211692 0.34336 0.0272243 0.0122003 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00869333 0.320679

CAGE analysis