Hb_001040_090

Information

Type -
Description -
Location Contig1040: 159942-161886
Sequence    

Annotation

kegg
ID tcc:TCM_029897
description Tetraspanin family protein isoform 2
nr
ID XP_012091581.1
description PREDICTED: tetraspanin-19-like [Jatropha curcas]
swissprot
ID Q940P5
description Tetraspanin-19 OS=Arabidopsis thaliana GN=TOM2AH3 PE=2 SV=1
trembl
ID B9N3E1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01467: 159307-160007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_090 0.0 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
2 Hb_001953_110 0.095746288 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
3 Hb_000039_190 0.1159354283 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_131719_010 0.1181821747 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_003349_020 0.1305235804 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
6 Hb_010904_010 0.1369346844 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
7 Hb_023904_010 0.1389954508 - - -
8 Hb_004374_100 0.139220322 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
9 Hb_003970_010 0.1460487637 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
10 Hb_004109_270 0.1468768192 transcription factor TF Family: NAC transcription activator NAC1 family protein [Populus trichocarpa]
11 Hb_008887_030 0.1511445391 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
12 Hb_001631_110 0.1546791715 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
13 Hb_000280_030 0.1548011577 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_000340_380 0.1554462465 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
15 Hb_090889_010 0.16196443 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
16 Hb_000732_160 0.1634263438 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
17 Hb_031685_010 0.1645669108 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000705_010 0.1683158636 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
19 Hb_002211_020 0.170711024 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
20 Hb_061126_010 0.1709783246 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001040_090 Hb_001040_090 Hb_001953_110 Hb_001953_110 Hb_001040_090--Hb_001953_110 Hb_000039_190 Hb_000039_190 Hb_001040_090--Hb_000039_190 Hb_131719_010 Hb_131719_010 Hb_001040_090--Hb_131719_010 Hb_003349_020 Hb_003349_020 Hb_001040_090--Hb_003349_020 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_023904_010 Hb_023904_010 Hb_001040_090--Hb_023904_010 Hb_001953_110--Hb_023904_010 Hb_005227_030 Hb_005227_030 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_002818_160 Hb_002818_160 Hb_001953_110--Hb_002818_160 Hb_090889_010 Hb_090889_010 Hb_000039_190--Hb_090889_010 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003062_020 Hb_003062_020 Hb_000039_190--Hb_003062_020 Hb_003050_010 Hb_003050_010 Hb_000039_190--Hb_003050_010 Hb_000987_160 Hb_000987_160 Hb_000039_190--Hb_000987_160 Hb_131719_010--Hb_001953_110 Hb_131719_010--Hb_003349_020 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_131719_010--Hb_002818_160 Hb_135714_010 Hb_135714_010 Hb_131719_010--Hb_135714_010 Hb_003349_020--Hb_023904_010 Hb_003349_020--Hb_135714_010 Hb_003349_020--Hb_001953_110 Hb_031685_010 Hb_031685_010 Hb_003349_020--Hb_031685_010 Hb_010904_010--Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_010904_010--Hb_002211_020 Hb_000732_160 Hb_000732_160 Hb_010904_010--Hb_000732_160 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_008202_010 Hb_008202_010 Hb_010904_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_010904_010--Hb_000110_040 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.871053 1.51429 0.102167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.153384 1.61773

CAGE analysis