Hb_003970_010

Information

Type -
Description -
Location Contig3970: 7842-8321
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03600g
description POPTRDRAFT_825049; hypothetical protein
nr
ID XP_011000428.1
description PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
swissprot
ID O80669
description Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=SIB2 PE=1 SV=1
trembl
ID B9IHR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03600g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003970_010 0.0 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
2 Hb_002211_020 0.0613373432 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
3 Hb_010904_010 0.0700851799 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
4 Hb_000031_320 0.0865772866 - - unnamed protein product [Vitis vinifera]
5 Hb_008202_010 0.098151859 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000110_040 0.103876138 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
7 Hb_046739_010 0.1092193333 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
8 Hb_002818_160 0.1100181538 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
9 Hb_000186_180 0.114523412 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
10 Hb_001677_170 0.1201006995 - - hypothetical protein M569_03661, partial [Genlisea aurea]
11 Hb_011028_030 0.1205836125 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001953_110 0.1254713782 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
13 Hb_019863_050 0.1310963648 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
14 Hb_002307_120 0.131993523 - - scab resistance family protein [Populus trichocarpa]
15 Hb_006188_020 0.1335278238 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
16 Hb_003654_020 0.136351747 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_111997_010 0.1370151471 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
18 Hb_029584_110 0.137463025 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
19 Hb_001777_030 0.1382202847 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
20 Hb_000340_380 0.139872403 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]

Gene co-expression network

sample Hb_003970_010 Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_003970_010--Hb_002211_020 Hb_010904_010 Hb_010904_010 Hb_003970_010--Hb_010904_010 Hb_000031_320 Hb_000031_320 Hb_003970_010--Hb_000031_320 Hb_008202_010 Hb_008202_010 Hb_003970_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_003970_010--Hb_000110_040 Hb_046739_010 Hb_046739_010 Hb_003970_010--Hb_046739_010 Hb_002211_020--Hb_010904_010 Hb_011028_030 Hb_011028_030 Hb_002211_020--Hb_011028_030 Hb_019863_050 Hb_019863_050 Hb_002211_020--Hb_019863_050 Hb_002211_020--Hb_000031_320 Hb_002211_020--Hb_000110_040 Hb_000732_160 Hb_000732_160 Hb_010904_010--Hb_000732_160 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_010904_010--Hb_008202_010 Hb_010904_010--Hb_000110_040 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_029584_110 Hb_029584_110 Hb_008202_010--Hb_029584_110 Hb_135714_010 Hb_135714_010 Hb_008202_010--Hb_135714_010 Hb_005888_050 Hb_005888_050 Hb_008202_010--Hb_005888_050 Hb_002596_090 Hb_002596_090 Hb_008202_010--Hb_002596_090 Hb_111997_010 Hb_111997_010 Hb_008202_010--Hb_111997_010 Hb_000110_040--Hb_008202_010 Hb_000656_260 Hb_000656_260 Hb_000110_040--Hb_000656_260 Hb_000340_380 Hb_000340_380 Hb_000110_040--Hb_000340_380 Hb_046739_010--Hb_002407_090 Hb_046739_010--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_046739_010--Hb_033363_030 Hb_002010_030 Hb_002010_030 Hb_046739_010--Hb_002010_030 Hb_096224_050 Hb_096224_050 Hb_046739_010--Hb_096224_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.03169 10.391 3.19945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.706484 11.0751

CAGE analysis