Hb_033363_030

Information

Type -
Description -
Location Contig33363: 21205-26635
Sequence    

Annotation

kegg
ID rcu:RCOM_0705590
description serine/threonine protein kinase, putative
nr
ID XP_012082027.1
description PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
swissprot
ID Q9S713
description Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1
trembl
ID A0A067K2V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18284 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35006: 21467-26452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_030 0.0 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
2 Hb_096224_050 0.0687699783 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
3 Hb_004979_080 0.075932204 - - kinase, putative [Ricinus communis]
4 Hb_000027_110 0.0775308851 - - wall-associated kinase, putative [Ricinus communis]
5 Hb_000668_180 0.0793927191 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
6 Hb_046739_010 0.0865589571 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
7 Hb_011028_030 0.0872363915 - - conserved hypothetical protein [Ricinus communis]
8 Hb_025557_060 0.0922395614 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
9 Hb_007904_110 0.0983144469 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
10 Hb_000644_010 0.0989636947 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_003125_090 0.1011740851 - - -
12 Hb_186844_010 0.101515922 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_019863_050 0.1015930727 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
14 Hb_002407_090 0.102579025 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
15 Hb_000373_010 0.1027907215 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000373_160 0.1038402266 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
17 Hb_004979_070 0.1042627994 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
18 Hb_031069_040 0.1059424371 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_119600_030 0.1070840617 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
20 Hb_000031_320 0.1077518348 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_033363_030 Hb_033363_030 Hb_096224_050 Hb_096224_050 Hb_033363_030--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_033363_030--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_033363_030--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_007904_110 Hb_007904_110 Hb_096224_050--Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_000027_110 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_004979_070 Hb_004979_080--Hb_007904_110 Hb_004979_080--Hb_000668_180 Hb_000027_110--Hb_000644_010 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_000951_070 Hb_000951_070 Hb_000668_180--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000668_180--Hb_010402_040 Hb_031069_040 Hb_031069_040 Hb_000668_180--Hb_031069_040 Hb_000031_320 Hb_000031_320 Hb_046739_010--Hb_000031_320 Hb_002407_090 Hb_002407_090 Hb_046739_010--Hb_002407_090 Hb_046739_010--Hb_011028_030 Hb_002010_030 Hb_002010_030 Hb_046739_010--Hb_002010_030 Hb_046739_010--Hb_096224_050 Hb_002155_020 Hb_002155_020 Hb_011028_030--Hb_002155_020 Hb_000373_010 Hb_000373_010 Hb_011028_030--Hb_000373_010 Hb_011028_030--Hb_002407_090 Hb_011028_030--Hb_000031_320 Hb_011028_030--Hb_000644_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0326262 35.8804 54.8286 30.1631 0.0357239 0.0261363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.340864 0.217918 0.0318311 3.21959 120.664

CAGE analysis