Hb_002155_020

Information

Type -
Description -
Location Contig2155: 98891-100280
Sequence    

Annotation

kegg
ID rcu:RCOM_1250900
description WRKY transcription factor, putative
nr
ID XP_012091816.1
description PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
swissprot
ID Q9LP56
description Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1
trembl
ID S5CFV3
description Uncharacterized protein OS=Jatropha curcas GN=WRKY50 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22284: 98705-100181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002155_020 0.0 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
2 Hb_011028_030 0.0603889814 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000373_010 0.0679544351 - - ATP binding protein, putative [Ricinus communis]
4 Hb_003643_080 0.071956807 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
5 Hb_000644_010 0.075337025 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
6 Hb_000680_130 0.0861728261 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_002407_090 0.0976546756 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
8 Hb_006827_030 0.1036369977 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_046739_010 0.1047166677 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_001579_060 0.1051772074 - - carbonic anhydrase, putative [Ricinus communis]
11 Hb_000968_010 0.1078752145 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
12 Hb_171168_010 0.1089752589 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_096224_050 0.110899415 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
14 Hb_002615_080 0.120892602 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
15 Hb_011104_020 0.1228478163 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
16 Hb_000270_640 0.1237796589 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
17 Hb_004979_080 0.1240411154 - - kinase, putative [Ricinus communis]
18 Hb_019863_050 0.1271910845 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
19 Hb_033363_030 0.1276849873 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
20 Hb_002211_020 0.1285283747 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002155_020 Hb_002155_020 Hb_011028_030 Hb_011028_030 Hb_002155_020--Hb_011028_030 Hb_000373_010 Hb_000373_010 Hb_002155_020--Hb_000373_010 Hb_003643_080 Hb_003643_080 Hb_002155_020--Hb_003643_080 Hb_000644_010 Hb_000644_010 Hb_002155_020--Hb_000644_010 Hb_000680_130 Hb_000680_130 Hb_002155_020--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_002155_020--Hb_002407_090 Hb_046739_010 Hb_046739_010 Hb_011028_030--Hb_046739_010 Hb_011028_030--Hb_000373_010 Hb_011028_030--Hb_002407_090 Hb_000031_320 Hb_000031_320 Hb_011028_030--Hb_000031_320 Hb_011028_030--Hb_000644_010 Hb_000373_010--Hb_000644_010 Hb_000373_010--Hb_000680_130 Hb_000373_010--Hb_002407_090 Hb_096224_050 Hb_096224_050 Hb_000373_010--Hb_096224_050 Hb_003643_080--Hb_000644_010 Hb_003643_080--Hb_011028_030 Hb_000574_340 Hb_000574_340 Hb_003643_080--Hb_000574_340 Hb_004979_080 Hb_004979_080 Hb_003643_080--Hb_004979_080 Hb_003643_080--Hb_000373_010 Hb_000644_010--Hb_096224_050 Hb_000644_010--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110 Hb_000705_040 Hb_000705_040 Hb_000680_130--Hb_000705_040 Hb_002636_070 Hb_002636_070 Hb_000680_130--Hb_002636_070 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_001579_060 Hb_001579_060 Hb_000680_130--Hb_001579_060 Hb_002407_090--Hb_046739_010 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011104_020 Hb_011104_020 Hb_002407_090--Hb_011104_020 Hb_000270_090 Hb_000270_090 Hb_002407_090--Hb_000270_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.458266 0.660462 0.322111 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.177563 1.20685

CAGE analysis