Hb_000680_130

Information

Type -
Description -
Location Contig680: 116827-124337
Sequence    

Annotation

kegg
ID rcu:RCOM_0312450
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002527409.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCW1
description Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1
trembl
ID B9SN40
description Beta-galactosidase OS=Ricinus communis GN=RCOM_0312450 PE=3 SV=1
Gene Ontology
ID GO:0009505
description beta-galactosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53756: 116898-124238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_130 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_000373_010 0.0767705219 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000705_040 0.0792321414 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002155_020 0.0861728261 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
5 Hb_002636_070 0.0874007327 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
6 Hb_032695_010 0.087513626 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
7 Hb_001579_060 0.0878519359 - - carbonic anhydrase, putative [Ricinus communis]
8 Hb_000270_640 0.0943889889 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
9 Hb_000968_010 0.0944873383 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
10 Hb_001883_010 0.0966056532 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_001417_060 0.0977786523 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
12 Hb_002615_080 0.0984159227 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
13 Hb_001046_030 0.100028469 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_004946_010 0.1025794374 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
15 Hb_004880_050 0.1026188897 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001248_070 0.1089184974 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
17 Hb_017358_020 0.1093086024 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
18 Hb_011028_030 0.111199618 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000608_290 0.1114063168 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_001629_120 0.1120377008 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000680_130 Hb_000680_130 Hb_000373_010 Hb_000373_010 Hb_000680_130--Hb_000373_010 Hb_000705_040 Hb_000705_040 Hb_000680_130--Hb_000705_040 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_002636_070 Hb_002636_070 Hb_000680_130--Hb_002636_070 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_001579_060 Hb_001579_060 Hb_000680_130--Hb_001579_060 Hb_011028_030 Hb_011028_030 Hb_000373_010--Hb_011028_030 Hb_000373_010--Hb_002155_020 Hb_000644_010 Hb_000644_010 Hb_000373_010--Hb_000644_010 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_096224_050 Hb_096224_050 Hb_000373_010--Hb_096224_050 Hb_000270_640 Hb_000270_640 Hb_000705_040--Hb_000270_640 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_002073_150 Hb_002073_150 Hb_000705_040--Hb_002073_150 Hb_029223_010 Hb_029223_010 Hb_000705_040--Hb_029223_010 Hb_002155_020--Hb_011028_030 Hb_003643_080 Hb_003643_080 Hb_002155_020--Hb_003643_080 Hb_002155_020--Hb_000644_010 Hb_002155_020--Hb_002407_090 Hb_002636_070--Hb_029223_010 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_002636_070--Hb_000705_040 Hb_002636_070--Hb_000270_640 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_000025_590 Hb_000025_590 Hb_032695_010--Hb_000025_590 Hb_001883_010 Hb_001883_010 Hb_032695_010--Hb_001883_010 Hb_017358_020 Hb_017358_020 Hb_032695_010--Hb_017358_020 Hb_001046_030 Hb_001046_030 Hb_032695_010--Hb_001046_030 Hb_000987_020 Hb_000987_020 Hb_032695_010--Hb_000987_020 Hb_006827_030 Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_001579_060--Hb_000987_020 Hb_001579_060--Hb_001883_010 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134935 41.6423 66.743 54.5098 0.112595 0.0625436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0661196 0.0520321 0.0398689 24.8724 128.752

CAGE analysis