Hb_017358_020

Information

Type -
Description -
Location Contig17358: 25128-25733
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16490g
description POPTRDRAFT_573100; hypothetical protein
nr
ID XP_002320520.1
description hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IAT3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16490g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16514: 25125-25785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017358_020 0.0 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
2 Hb_001046_030 0.0460833568 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_001417_060 0.0556887776 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
4 Hb_000868_130 0.063756205 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
5 Hb_003266_010 0.0852221063 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
6 Hb_032695_010 0.0899295242 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
7 Hb_000162_200 0.0935136165 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_000473_100 0.0939523389 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_002942_200 0.098542207 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
10 Hb_002095_020 0.0990130387 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
11 Hb_002902_070 0.0991481503 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
12 Hb_001369_390 0.101208583 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
13 Hb_001098_040 0.101874683 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
14 Hb_000318_010 0.1022517123 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
15 Hb_000836_030 0.1046557792 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_001789_120 0.1075551993 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
17 Hb_000680_130 0.1093086024 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_000290_030 0.1093550151 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
19 Hb_032779_010 0.1102987815 - - unnamed protein product [Vitis vinifera]
20 Hb_000856_200 0.1113276498 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_017358_020 Hb_017358_020 Hb_001046_030 Hb_001046_030 Hb_017358_020--Hb_001046_030 Hb_001417_060 Hb_001417_060 Hb_017358_020--Hb_001417_060 Hb_000868_130 Hb_000868_130 Hb_017358_020--Hb_000868_130 Hb_003266_010 Hb_003266_010 Hb_017358_020--Hb_003266_010 Hb_032695_010 Hb_032695_010 Hb_017358_020--Hb_032695_010 Hb_000162_200 Hb_000162_200 Hb_017358_020--Hb_000162_200 Hb_001046_030--Hb_001417_060 Hb_001046_030--Hb_000868_130 Hb_001046_030--Hb_003266_010 Hb_001046_030--Hb_032695_010 Hb_000856_200 Hb_000856_200 Hb_001046_030--Hb_000856_200 Hb_001417_060--Hb_000868_130 Hb_001789_120 Hb_001789_120 Hb_001417_060--Hb_001789_120 Hb_000627_050 Hb_000627_050 Hb_001417_060--Hb_000627_050 Hb_000941_090 Hb_000941_090 Hb_001417_060--Hb_000941_090 Hb_002902_070 Hb_002902_070 Hb_000868_130--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_000868_130--Hb_000473_100 Hb_000069_540 Hb_000069_540 Hb_000868_130--Hb_000069_540 Hb_000868_130--Hb_003266_010 Hb_002095_020 Hb_002095_020 Hb_003266_010--Hb_002095_020 Hb_003266_010--Hb_000473_100 Hb_144449_010 Hb_144449_010 Hb_003266_010--Hb_144449_010 Hb_000025_590 Hb_000025_590 Hb_032695_010--Hb_000025_590 Hb_001883_010 Hb_001883_010 Hb_032695_010--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_032695_010--Hb_000680_130 Hb_000987_020 Hb_000987_020 Hb_032695_010--Hb_000987_020 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_003506_010 Hb_003506_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000977_030 Hb_000977_030 Hb_000162_200--Hb_000977_030 Hb_005892_040 Hb_005892_040 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.18771 2.04376 2.8744 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.993522 3.63763

CAGE analysis