Hb_000473_100

Information

Type -
Description -
Location Contig473: 131674-149806
Sequence    

Annotation

kegg
ID rcu:RCOM_1698650
description uvb-resistance protein uvr8, putative
nr
ID XP_012081953.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067K329
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19287 PE=4 SV=1
Gene Ontology
ID GO:0005488
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44421: 117949-149790 , PASA_asmbl_44422: 139798-145642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_100 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_000868_130 0.0673683426 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
3 Hb_144449_010 0.0770731186 - - Potassium transporter, putative [Ricinus communis]
4 Hb_002902_040 0.0832200299 - - PREDICTED: peroxidase 51 [Jatropha curcas]
5 Hb_000069_540 0.0839583127 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
6 Hb_001269_400 0.0839950475 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
7 Hb_000856_200 0.0840724167 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
8 Hb_003266_010 0.0849338171 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
9 Hb_002151_020 0.0864134422 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
10 Hb_019496_040 0.0882396853 - - kinase family protein [Populus trichocarpa]
11 Hb_010557_020 0.0885199665 - - Mlo protein [Hevea brasiliensis]
12 Hb_000290_030 0.089724589 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
13 Hb_003454_050 0.0904910004 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
14 Hb_001046_030 0.0925803889 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_017358_020 0.0939523389 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
16 Hb_002902_070 0.0960350847 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
17 Hb_106089_010 0.100290527 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_000162_200 0.1004740957 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
19 Hb_002095_020 0.1022509004 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
20 Hb_000342_020 0.1058036528 - - bel1 homeotic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000473_100 Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_000473_100--Hb_000868_130 Hb_144449_010 Hb_144449_010 Hb_000473_100--Hb_144449_010 Hb_002902_040 Hb_002902_040 Hb_000473_100--Hb_002902_040 Hb_000069_540 Hb_000069_540 Hb_000473_100--Hb_000069_540 Hb_001269_400 Hb_001269_400 Hb_000473_100--Hb_001269_400 Hb_000856_200 Hb_000856_200 Hb_000473_100--Hb_000856_200 Hb_001046_030 Hb_001046_030 Hb_000868_130--Hb_001046_030 Hb_002902_070 Hb_002902_070 Hb_000868_130--Hb_002902_070 Hb_017358_020 Hb_017358_020 Hb_000868_130--Hb_017358_020 Hb_000868_130--Hb_000069_540 Hb_003266_010 Hb_003266_010 Hb_000868_130--Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020 Hb_144449_010--Hb_000856_200 Hb_002151_020 Hb_002151_020 Hb_002902_040--Hb_002151_020 Hb_019496_040 Hb_019496_040 Hb_002902_040--Hb_019496_040 Hb_142026_010 Hb_142026_010 Hb_002902_040--Hb_142026_010 Hb_002205_150 Hb_002205_150 Hb_002902_040--Hb_002205_150 Hb_000342_020 Hb_000342_020 Hb_002902_040--Hb_000342_020 Hb_144703_010 Hb_144703_010 Hb_002902_040--Hb_144703_010 Hb_000069_540--Hb_002902_070 Hb_000069_540--Hb_144703_010 Hb_000069_540--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_000069_540--Hb_008598_010 Hb_000069_540--Hb_002902_040 Hb_149055_010 Hb_149055_010 Hb_001269_400--Hb_149055_010 Hb_001269_400--Hb_002151_020 Hb_001269_400--Hb_002902_040 Hb_007237_080 Hb_007237_080 Hb_001269_400--Hb_007237_080 Hb_001269_400--Hb_000342_020 Hb_010222_040 Hb_010222_040 Hb_000856_200--Hb_010222_040 Hb_000856_200--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_000856_200--Hb_000290_030 Hb_000856_200--Hb_001046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0947046 23.0623 32.7171 59.4512 0.138625 0.241277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0332719 0.0523502 0 19.9296 46.5993

CAGE analysis