Hb_019496_040

Information

Type -
Description -
Location Contig19496: 65936-69637
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16760g
description kinase family protein
nr
ID XP_006377964.1
description kinase family protein [Populus trichocarpa]
swissprot
ID C0LGR3
description Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=2 SV=1
trembl
ID U5G0K9
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0011s16760g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g26540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19454: 66457-67113 , PASA_asmbl_19456: 67862-69601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019496_040 0.0 - - kinase family protein [Populus trichocarpa]
2 Hb_002902_040 0.0617588365 - - PREDICTED: peroxidase 51 [Jatropha curcas]
3 Hb_144703_010 0.0662713117 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
4 Hb_000069_540 0.0690911103 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
5 Hb_142026_010 0.073528134 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
6 Hb_002151_020 0.0790279154 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
7 Hb_000342_020 0.0832691124 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_000473_100 0.0882396853 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_002902_070 0.0888191926 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
10 Hb_001544_070 0.0926925323 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
11 Hb_000868_130 0.093142826 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
12 Hb_106089_010 0.0935031969 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
13 Hb_001174_030 0.0942744568 - - unnamed protein product [Vitis vinifera]
14 Hb_000472_020 0.0987437151 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
15 Hb_030982_050 0.0995680088 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
16 Hb_003454_050 0.1005094957 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
17 Hb_001706_020 0.1011188556 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
18 Hb_008598_010 0.1065014242 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_002205_150 0.1078084941 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
20 Hb_000215_290 0.1085926318 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_019496_040 Hb_019496_040 Hb_002902_040 Hb_002902_040 Hb_019496_040--Hb_002902_040 Hb_144703_010 Hb_144703_010 Hb_019496_040--Hb_144703_010 Hb_000069_540 Hb_000069_540 Hb_019496_040--Hb_000069_540 Hb_142026_010 Hb_142026_010 Hb_019496_040--Hb_142026_010 Hb_002151_020 Hb_002151_020 Hb_019496_040--Hb_002151_020 Hb_000342_020 Hb_000342_020 Hb_019496_040--Hb_000342_020 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_142026_010 Hb_002205_150 Hb_002205_150 Hb_002902_040--Hb_002205_150 Hb_002902_040--Hb_000342_020 Hb_002902_040--Hb_144703_010 Hb_144703_010--Hb_000069_540 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_000472_020 Hb_000472_020 Hb_144703_010--Hb_000472_020 Hb_144703_010--Hb_000342_020 Hb_002902_070 Hb_002902_070 Hb_000069_540--Hb_002902_070 Hb_000868_130 Hb_000868_130 Hb_000069_540--Hb_000868_130 Hb_000069_540--Hb_008598_010 Hb_000069_540--Hb_002902_040 Hb_142026_010--Hb_002205_150 Hb_106089_010 Hb_106089_010 Hb_142026_010--Hb_106089_010 Hb_003454_050 Hb_003454_050 Hb_142026_010--Hb_003454_050 Hb_000163_180 Hb_000163_180 Hb_142026_010--Hb_000163_180 Hb_001269_400 Hb_001269_400 Hb_002151_020--Hb_001269_400 Hb_002151_020--Hb_008598_010 Hb_000045_080 Hb_000045_080 Hb_002151_020--Hb_000045_080 Hb_000473_100 Hb_000473_100 Hb_002151_020--Hb_000473_100 Hb_000613_250 Hb_000613_250 Hb_000342_020--Hb_000613_250 Hb_000342_020--Hb_000472_020 Hb_000342_020--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.94173 2.75029 4.44113 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.78171 3.5029

CAGE analysis