Hb_003454_050

Information

Type -
Description -
Location Contig3454: 79906-93674
Sequence    

Annotation

kegg
ID rcu:RCOM_0519450
description ATP binding protein, putative
nr
ID XP_012089660.1
description PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
swissprot
ID Q94EJ6
description Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=2 SV=1
trembl
ID A0A067JSC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01776 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36071: 79946-93503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003454_050 0.0 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
2 Hb_106089_010 0.0522684505 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_002205_150 0.0746591466 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
4 Hb_004228_070 0.0750874004 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
5 Hb_142026_010 0.0784372839 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
6 Hb_002902_040 0.0806166718 - - PREDICTED: peroxidase 51 [Jatropha curcas]
7 Hb_026240_020 0.0841690727 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
8 Hb_021576_130 0.084397756 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
9 Hb_000473_100 0.0904910004 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
10 Hb_007221_040 0.0970417224 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
11 Hb_044653_050 0.0971764963 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
12 Hb_003092_020 0.0972441284 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
13 Hb_039075_020 0.1001552061 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
14 Hb_019496_040 0.1005094957 - - kinase family protein [Populus trichocarpa]
15 Hb_002151_020 0.1010177184 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
16 Hb_003266_090 0.1015613975 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
17 Hb_012539_100 0.1020317178 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
18 Hb_000856_200 0.102861093 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
19 Hb_001946_200 0.1041918791 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_000977_030 0.1071984823 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003454_050 Hb_003454_050 Hb_106089_010 Hb_106089_010 Hb_003454_050--Hb_106089_010 Hb_002205_150 Hb_002205_150 Hb_003454_050--Hb_002205_150 Hb_004228_070 Hb_004228_070 Hb_003454_050--Hb_004228_070 Hb_142026_010 Hb_142026_010 Hb_003454_050--Hb_142026_010 Hb_002902_040 Hb_002902_040 Hb_003454_050--Hb_002902_040 Hb_026240_020 Hb_026240_020 Hb_003454_050--Hb_026240_020 Hb_106089_010--Hb_142026_010 Hb_106089_010--Hb_002205_150 Hb_030982_050 Hb_030982_050 Hb_106089_010--Hb_030982_050 Hb_106089_010--Hb_002902_040 Hb_006970_170 Hb_006970_170 Hb_106089_010--Hb_006970_170 Hb_002205_150--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_002205_150--Hb_012539_100 Hb_002205_150--Hb_004228_070 Hb_002205_150--Hb_002902_040 Hb_004634_030 Hb_004634_030 Hb_002205_150--Hb_004634_030 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_142026_010--Hb_002902_040 Hb_019496_040 Hb_019496_040 Hb_142026_010--Hb_019496_040 Hb_000163_180 Hb_000163_180 Hb_142026_010--Hb_000163_180 Hb_002151_020 Hb_002151_020 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_019496_040 Hb_000342_020 Hb_000342_020 Hb_002902_040--Hb_000342_020 Hb_144703_010 Hb_144703_010 Hb_002902_040--Hb_144703_010 Hb_000977_030 Hb_000977_030 Hb_026240_020--Hb_000977_030 Hb_003092_020 Hb_003092_020 Hb_026240_020--Hb_003092_020 Hb_005892_040 Hb_005892_040 Hb_026240_020--Hb_005892_040 Hb_005730_110 Hb_005730_110 Hb_026240_020--Hb_005730_110 Hb_003506_010 Hb_003506_010 Hb_026240_020--Hb_003506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290382 24.2007 39.5414 48.8157 0.080011 0.195823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0555122 0 0.0277325 13.0599 34.3822

CAGE analysis