Hb_003506_010

Information

Type -
Description -
Location Contig3506: 13304-16902
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02330g
description POPTRDRAFT_823214; calmodulin-binding family protein
nr
ID KDP23109.1
description hypothetical protein JCGZ_01146 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067JUA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01146 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36494: 13291-16881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_010 0.0 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
2 Hb_004162_320 0.0399593975 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
3 Hb_005892_040 0.0536650246 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
4 Hb_002078_320 0.0603998512 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
5 Hb_020805_070 0.0720441575 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
6 Hb_004855_080 0.0755428537 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
7 Hb_000162_200 0.0766622249 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_001405_040 0.0771024975 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
9 Hb_001488_420 0.0799710055 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
10 Hb_000008_150 0.0801471073 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_026240_020 0.089268126 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
12 Hb_001135_010 0.0949389047 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
13 Hb_002635_020 0.0996115667 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
14 Hb_001104_020 0.1005466427 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000977_030 0.1008161034 - - unnamed protein product [Vitis vinifera]
16 Hb_000901_010 0.1012594326 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
17 Hb_000318_010 0.1079254742 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
18 Hb_000732_220 0.1081322774 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
19 Hb_000152_120 0.1090028735 - - alpha-l-fucosidase, putative [Ricinus communis]
20 Hb_005730_110 0.1090741635 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_003506_010 Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_003506_010--Hb_004162_320 Hb_005892_040 Hb_005892_040 Hb_003506_010--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_020805_070 Hb_020805_070 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_004162_320--Hb_005892_040 Hb_004162_320--Hb_020805_070 Hb_004162_320--Hb_002078_320 Hb_004162_320--Hb_000162_200 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_005892_040--Hb_001405_040 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030 Hb_000901_010 Hb_000901_010 Hb_002078_320--Hb_000901_010 Hb_000987_020 Hb_000987_020 Hb_002078_320--Hb_000987_020 Hb_000185_170 Hb_000185_170 Hb_002078_320--Hb_000185_170 Hb_002078_320--Hb_020805_070 Hb_020805_070--Hb_001405_040 Hb_020805_070--Hb_000901_010 Hb_000008_150 Hb_000008_150 Hb_004855_080--Hb_000008_150 Hb_001488_420 Hb_001488_420 Hb_004855_080--Hb_001488_420 Hb_004855_080--Hb_001405_040 Hb_000759_040 Hb_000759_040 Hb_004855_080--Hb_000759_040 Hb_004602_010 Hb_004602_010 Hb_004855_080--Hb_004602_010 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_000162_200--Hb_000977_030 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0960212 7.1334 27.9257 22.0858 0.0275928 0.0352095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0436361 0 0 12.5771 22.6955

CAGE analysis