Hb_000008_150

Information

Type -
Description -
Location Contig8: 179198-183012
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01590g
description POPTRDRAFT_558271; cyclic nucleotide-gated ion channel 15 family protein
nr
ID XP_012064795.1
description PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
swissprot
ID Q8L7Z0
description Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1
trembl
ID B9HQC1
description Cyclic nucleotide-gated ion channel 15 family protein OS=Populus trichocarpa GN=POPTR_0009s01590g PE=4 SV=1
Gene Ontology
ID GO:0016020
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58660: 178936-179181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_150 0.0 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
2 Hb_004855_080 0.0500505193 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_001488_420 0.0568948018 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
4 Hb_001405_040 0.0745511504 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
5 Hb_004602_010 0.0761242006 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
6 Hb_003506_010 0.0801471073 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_005892_040 0.0907527102 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
8 Hb_000759_040 0.0925374848 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_008304_010 0.0953897933 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
10 Hb_009788_020 0.0954655197 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
11 Hb_003938_230 0.0957853249 - - Potassium transporter, putative [Ricinus communis]
12 Hb_019570_010 0.0973226266 - - lyase, putative [Ricinus communis]
13 Hb_002822_010 0.0986724583 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
14 Hb_004218_140 0.0996662309 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
15 Hb_004116_050 0.1016022165 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
16 Hb_000703_120 0.1051885014 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
17 Hb_000732_220 0.1076485248 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
18 Hb_004592_010 0.1084598632 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
19 Hb_005892_050 0.1098758804 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
20 Hb_005535_070 0.1102518246 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000008_150 Hb_000008_150 Hb_004855_080 Hb_004855_080 Hb_000008_150--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000008_150--Hb_001488_420 Hb_001405_040 Hb_001405_040 Hb_000008_150--Hb_001405_040 Hb_004602_010 Hb_004602_010 Hb_000008_150--Hb_004602_010 Hb_003506_010 Hb_003506_010 Hb_000008_150--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_000008_150--Hb_005892_040 Hb_004855_080--Hb_001488_420 Hb_004855_080--Hb_001405_040 Hb_000759_040 Hb_000759_040 Hb_004855_080--Hb_000759_040 Hb_004855_080--Hb_003506_010 Hb_004855_080--Hb_004602_010 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_001488_420--Hb_003506_010 Hb_001488_420--Hb_004602_010 Hb_020805_070 Hb_020805_070 Hb_001405_040--Hb_020805_070 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_001405_040--Hb_003506_010 Hb_001405_040--Hb_005892_040 Hb_004602_010--Hb_000759_040 Hb_004602_010--Hb_004218_140 Hb_005892_050 Hb_005892_050 Hb_004602_010--Hb_005892_050 Hb_008304_010 Hb_008304_010 Hb_004602_010--Hb_008304_010 Hb_004162_320 Hb_004162_320 Hb_003506_010--Hb_004162_320 Hb_003506_010--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_003506_010--Hb_020805_070 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00979528 0.291238 2.26113 1.5804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.689761 1.7033

CAGE analysis