Hb_001488_420

Information

Type -
Description -
Location Contig1488: 335137-342056
Sequence    

Annotation

kegg
ID rcu:RCOM_0048860
description Multidrug resistance protein, putative (EC:3.6.3.44)
nr
ID XP_012084841.1
description PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
swissprot
ID Q9FNU2
description ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1
trembl
ID A0A067K4V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19964 PE=3 SV=1
Gene Ontology
ID GO:0000325
description abc transporter b family member 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12346: 335073-340835 , PASA_asmbl_12347: 341727-341956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_420 0.0 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
2 Hb_004855_080 0.0547215162 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_000008_150 0.0568948018 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
4 Hb_000759_040 0.0769021152 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
5 Hb_004218_140 0.078804188 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
6 Hb_003506_010 0.0799710055 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_004602_010 0.0808115506 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
8 Hb_009788_020 0.0823284605 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
9 Hb_002822_010 0.087300608 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
10 Hb_008304_010 0.0915182181 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
11 Hb_000703_120 0.0926806531 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
12 Hb_005892_050 0.0930935882 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
13 Hb_005730_110 0.093271061 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_002890_200 0.0933490997 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
15 Hb_003938_230 0.0934615741 - - Potassium transporter, putative [Ricinus communis]
16 Hb_005892_040 0.0971494762 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
17 Hb_001405_040 0.0974435997 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
18 Hb_000627_040 0.0984711148 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_000212_410 0.098928765 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
20 Hb_002078_320 0.1015722504 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_420 Hb_001488_420 Hb_004855_080 Hb_004855_080 Hb_001488_420--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001488_420--Hb_000008_150 Hb_000759_040 Hb_000759_040 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_003506_010 Hb_003506_010 Hb_001488_420--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_001488_420--Hb_004602_010 Hb_004855_080--Hb_000008_150 Hb_001405_040 Hb_001405_040 Hb_004855_080--Hb_001405_040 Hb_004855_080--Hb_000759_040 Hb_004855_080--Hb_003506_010 Hb_004855_080--Hb_004602_010 Hb_000008_150--Hb_001405_040 Hb_000008_150--Hb_004602_010 Hb_000008_150--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_000008_150--Hb_005892_040 Hb_005892_050 Hb_005892_050 Hb_000759_040--Hb_005892_050 Hb_000759_040--Hb_004602_010 Hb_000023_130 Hb_000023_130 Hb_000759_040--Hb_000023_130 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_004218_140--Hb_004602_010 Hb_121313_010 Hb_121313_010 Hb_004218_140--Hb_121313_010 Hb_004218_140--Hb_005892_050 Hb_008304_010 Hb_008304_010 Hb_004218_140--Hb_008304_010 Hb_000627_040 Hb_000627_040 Hb_004218_140--Hb_000627_040 Hb_004162_320 Hb_004162_320 Hb_003506_010--Hb_004162_320 Hb_003506_010--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_020805_070 Hb_020805_070 Hb_003506_010--Hb_020805_070 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_004602_010--Hb_005892_050 Hb_004602_010--Hb_008304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377627 5.80779 33.6905 22.79 0.0980239 0.0706389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765938 0.0301347 0.028678 8.54895 24.9696

CAGE analysis