Hb_000162_200

Information

Type -
Description -
Location Contig162: 283547-286414
Sequence    

Annotation

kegg
ID cit:102613106
description uncharacterized LOC102613106
nr
ID XP_012081746.1
description PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
swissprot
ID Q9HEZ1
description Endo-1,4-beta-xylanase A OS=Phanerochaete chrysosporium GN=xynA PE=1 SV=1
trembl
ID V4S661
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028121mg PE=4 SV=1
Gene Ontology
ID GO:0031176
description probable endo- -beta-xylanase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14588: 283948-284710 , PASA_asmbl_14589: 284758-284998 , PASA_asmbl_14590: 285350-285685 , PASA_asmbl_14591: 285991-286355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_200 0.0 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
2 Hb_000318_010 0.0649409615 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
3 Hb_003506_010 0.0766622249 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
4 Hb_004162_320 0.0817381958 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
5 Hb_000977_030 0.0828398259 - - unnamed protein product [Vitis vinifera]
6 Hb_005892_040 0.0882467524 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
7 Hb_007894_080 0.0912027745 - - conserved hypothetical protein [Ricinus communis]
8 Hb_017358_020 0.0935136165 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
9 Hb_001417_060 0.0937261386 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
10 Hb_020805_070 0.0939824956 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
11 Hb_001405_040 0.0948585932 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
12 Hb_010557_020 0.095104649 - - Mlo protein [Hevea brasiliensis]
13 Hb_002635_020 0.0960822444 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
14 Hb_002724_010 0.099729233 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
15 Hb_000473_100 0.1004740957 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
16 Hb_000290_030 0.1008554346 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
17 Hb_144449_010 0.1009336109 - - Potassium transporter, putative [Ricinus communis]
18 Hb_029639_030 0.1020550055 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
19 Hb_026240_020 0.1022775519 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
20 Hb_002078_320 0.10304415 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_200 Hb_000162_200 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_003506_010 Hb_003506_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000977_030 Hb_000977_030 Hb_000162_200--Hb_000977_030 Hb_005892_040 Hb_005892_040 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080 Hb_002724_010 Hb_002724_010 Hb_000318_010--Hb_002724_010 Hb_000703_120 Hb_000703_120 Hb_000318_010--Hb_000703_120 Hb_001417_060 Hb_001417_060 Hb_000318_010--Hb_001417_060 Hb_000977_020 Hb_000977_020 Hb_000318_010--Hb_000977_020 Hb_000318_010--Hb_000977_030 Hb_003506_010--Hb_004162_320 Hb_003506_010--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_020805_070 Hb_020805_070 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_004162_320--Hb_005892_040 Hb_004162_320--Hb_020805_070 Hb_004162_320--Hb_002078_320 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_026240_020 Hb_026240_020 Hb_000977_030--Hb_026240_020 Hb_000290_030 Hb_000290_030 Hb_000977_030--Hb_000290_030 Hb_003580_050 Hb_003580_050 Hb_000977_030--Hb_003580_050 Hb_000977_030--Hb_005892_040 Hb_000977_030--Hb_002724_010 Hb_005892_040--Hb_026240_020 Hb_005892_040--Hb_001405_040 Hb_005892_040--Hb_020805_070 Hb_000152_880 Hb_000152_880 Hb_007894_080--Hb_000152_880 Hb_033772_060 Hb_033772_060 Hb_007894_080--Hb_033772_060 Hb_000017_140 Hb_000017_140 Hb_007894_080--Hb_000017_140 Hb_007101_140 Hb_007101_140 Hb_007894_080--Hb_007101_140 Hb_029639_030 Hb_029639_030 Hb_007894_080--Hb_029639_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.05932 1.91726 5.35438 6.19088 0.0284114 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224686 0 0 2.83439 6.50178

CAGE analysis