Hb_001417_060

Information

Type -
Description -
Location Contig1417: 108277-119027
Sequence    

Annotation

kegg
ID rcu:RCOM_1618700
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012092930.1
description PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
swissprot
ID Q9SX33
description Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=3 SV=1
trembl
ID A0A067JKQ1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_05833 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11199: 110809-119136 , PASA_asmbl_11200: 111605-111780 , PASA_asmbl_11201: 117869-117995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001417_060 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
2 Hb_001046_030 0.0535238966 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_017358_020 0.0556887776 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
4 Hb_000868_130 0.0844028769 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
5 Hb_001789_120 0.0853112455 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_000627_050 0.0854258746 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
7 Hb_000941_090 0.0879815452 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
8 Hb_001629_120 0.0894720005 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
9 Hb_000318_010 0.0911181475 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
10 Hb_005365_010 0.0911246744 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
11 Hb_000162_200 0.0937261386 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
12 Hb_001098_040 0.0941786221 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
13 Hb_000703_120 0.0956784564 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
14 Hb_000856_200 0.0965962785 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
15 Hb_002942_200 0.0968788191 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
16 Hb_003145_010 0.0969639854 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
17 Hb_002724_010 0.0972594088 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
18 Hb_000680_130 0.0977786523 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_004880_050 0.10081793 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000290_030 0.1011252346 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001417_060 Hb_001417_060 Hb_001046_030 Hb_001046_030 Hb_001417_060--Hb_001046_030 Hb_017358_020 Hb_017358_020 Hb_001417_060--Hb_017358_020 Hb_000868_130 Hb_000868_130 Hb_001417_060--Hb_000868_130 Hb_001789_120 Hb_001789_120 Hb_001417_060--Hb_001789_120 Hb_000627_050 Hb_000627_050 Hb_001417_060--Hb_000627_050 Hb_000941_090 Hb_000941_090 Hb_001417_060--Hb_000941_090 Hb_001046_030--Hb_017358_020 Hb_001046_030--Hb_000868_130 Hb_003266_010 Hb_003266_010 Hb_001046_030--Hb_003266_010 Hb_032695_010 Hb_032695_010 Hb_001046_030--Hb_032695_010 Hb_000856_200 Hb_000856_200 Hb_001046_030--Hb_000856_200 Hb_017358_020--Hb_000868_130 Hb_017358_020--Hb_003266_010 Hb_017358_020--Hb_032695_010 Hb_000162_200 Hb_000162_200 Hb_017358_020--Hb_000162_200 Hb_002902_070 Hb_002902_070 Hb_000868_130--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_000868_130--Hb_000473_100 Hb_000069_540 Hb_000069_540 Hb_000868_130--Hb_000069_540 Hb_000868_130--Hb_003266_010 Hb_013394_120 Hb_013394_120 Hb_001789_120--Hb_013394_120 Hb_000818_090 Hb_000818_090 Hb_001789_120--Hb_000818_090 Hb_004880_050 Hb_004880_050 Hb_001789_120--Hb_004880_050 Hb_014700_030 Hb_014700_030 Hb_001789_120--Hb_014700_030 Hb_010222_060 Hb_010222_060 Hb_001789_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_001789_120--Hb_132840_170 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_002838_010 Hb_002838_010 Hb_000941_090--Hb_002838_010 Hb_031862_120 Hb_031862_120 Hb_000941_090--Hb_031862_120 Hb_000941_090--Hb_001789_120 Hb_000272_030 Hb_000272_030 Hb_000941_090--Hb_000272_030 Hb_000260_410 Hb_000260_410 Hb_000941_090--Hb_000260_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0412901 3.50929 6.7879 8.23516 0.00949002 0.00864527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0429671 0.00845344 0.0162372 2.42066 10.9066

CAGE analysis