Hb_132840_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig132840: 128603-130117
Sequence    

Annotation

kegg
ID tcc:TCM_005047
description Transcription factor
nr
ID XP_007051441.1
description Transcription factor [Theobroma cacao]
swissprot
ID Q84WP6
description NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2
trembl
ID A0A061E007
description Transcription factor OS=Theobroma cacao GN=TCM_005047 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_170 0.0 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
2 Hb_013394_120 0.0604733862 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_010222_060 0.065980458 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_173387_010 0.0687155743 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
5 Hb_000815_090 0.0761362858 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
6 Hb_009522_020 0.0780429534 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
7 Hb_014700_030 0.0800479568 - - tryptophan synthase beta chain, putative [Ricinus communis]
8 Hb_001789_120 0.0824362737 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
9 Hb_000818_090 0.0882099788 - - glutamate receptor 3 plant, putative [Ricinus communis]
10 Hb_102179_010 0.0918009779 - - protein binding protein, putative [Ricinus communis]
11 Hb_004880_050 0.0934529557 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000002_500 0.0985749669 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
13 Hb_004835_020 0.1015193202 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
14 Hb_001115_070 0.1024586785 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
15 Hb_025557_060 0.1092230877 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
16 Hb_000608_290 0.1100725201 - - thioredoxin f-type, putative [Ricinus communis]
17 Hb_003435_030 0.1105393329 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_009393_090 0.1116140746 - - acyltransferase, putative [Ricinus communis]
19 Hb_002284_160 0.1122036142 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_002713_060 0.1133586357 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_170 Hb_132840_170 Hb_013394_120 Hb_013394_120 Hb_132840_170--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_132840_170--Hb_010222_060 Hb_173387_010 Hb_173387_010 Hb_132840_170--Hb_173387_010 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_009522_020 Hb_009522_020 Hb_132840_170--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_132840_170--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_010222_060 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_013394_120--Hb_009522_020 Hb_013394_120--Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_010222_060--Hb_001789_120 Hb_010222_060--Hb_009522_020 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_173387_010--Hb_009522_020 Hb_000958_090 Hb_000958_090 Hb_173387_010--Hb_000958_090 Hb_173387_010--Hb_002713_060 Hb_173387_010--Hb_010222_060 Hb_004835_020 Hb_004835_020 Hb_173387_010--Hb_004835_020 Hb_000815_090--Hb_013394_120 Hb_002284_160 Hb_002284_160 Hb_000815_090--Hb_002284_160 Hb_000002_500 Hb_000002_500 Hb_000815_090--Hb_000002_500 Hb_001115_070 Hb_001115_070 Hb_000815_090--Hb_001115_070 Hb_000815_090--Hb_000818_090 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_005183_100 Hb_005183_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_014700_030--Hb_001789_120 Hb_004880_050 Hb_004880_050 Hb_014700_030--Hb_004880_050 Hb_032779_010 Hb_032779_010 Hb_014700_030--Hb_032779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.47822 3.96473 4.6486 0 0.0127851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.302729 7.36346

CAGE analysis