Hb_000958_090

Information

Type -
Description -
Location Contig958: 61557-65576
Sequence    

Annotation

kegg
ID rcu:RCOM_0968050
description monovalent cation:proton antiporter, putative
nr
ID XP_012065586.1
description PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
swissprot
ID Q8L709
description Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2 SV=2
trembl
ID A0A067L4T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16778 PE=4 SV=1
Gene Ontology
ID GO:0005618
description cation h(+) antiporter 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63586: 64237-64403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_090 0.0 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
2 Hb_026549_060 0.0643206525 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_000424_140 0.0666672942 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_001047_210 0.0715568303 - - PSI reaction center subunit II [Citrus sinensis]
5 Hb_004835_020 0.0718431559 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_173387_010 0.0763292993 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
7 Hb_005569_010 0.0791318111 - - Heme-binding protein, putative [Ricinus communis]
8 Hb_001699_110 0.0793635786 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
9 Hb_102179_010 0.0825109128 - - protein binding protein, putative [Ricinus communis]
10 Hb_005010_030 0.0835998881 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
11 Hb_000608_190 0.0906341544 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
12 Hb_000520_040 0.0917563843 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
13 Hb_000329_440 0.0918513764 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
14 Hb_005843_010 0.0933137999 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_002246_030 0.0935207662 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_001433_090 0.0946929575 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
17 Hb_005111_040 0.097578562 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_020956_030 0.0978450312 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
19 Hb_001541_200 0.0997755636 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
20 Hb_005678_020 0.1002021388 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000958_090 Hb_000958_090 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_000424_140 Hb_000424_140 Hb_000958_090--Hb_000424_140 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_004835_020 Hb_004835_020 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_005569_010 Hb_005569_010 Hb_000958_090--Hb_005569_010 Hb_001433_090 Hb_001433_090 Hb_026549_060--Hb_001433_090 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_020956_030 Hb_020956_030 Hb_026549_060--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_000424_140--Hb_005569_010 Hb_000670_070 Hb_000670_070 Hb_000424_140--Hb_000670_070 Hb_005842_010 Hb_005842_010 Hb_000424_140--Hb_005842_010 Hb_000608_190 Hb_000608_190 Hb_000424_140--Hb_000608_190 Hb_009421_070 Hb_009421_070 Hb_000424_140--Hb_009421_070 Hb_000520_040 Hb_000520_040 Hb_001047_210--Hb_000520_040 Hb_102179_010 Hb_102179_010 Hb_001047_210--Hb_102179_010 Hb_002246_030 Hb_002246_030 Hb_001047_210--Hb_002246_030 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_000500_240 Hb_000500_240 Hb_001047_210--Hb_000500_240 Hb_004835_020--Hb_102179_010 Hb_004835_020--Hb_005569_010 Hb_000329_440 Hb_000329_440 Hb_004835_020--Hb_000329_440 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210 Hb_009522_020 Hb_009522_020 Hb_173387_010--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_173387_010--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_173387_010--Hb_002713_060 Hb_010222_060 Hb_010222_060 Hb_173387_010--Hb_010222_060 Hb_173387_010--Hb_004835_020 Hb_000984_160 Hb_000984_160 Hb_005569_010--Hb_000984_160 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_005569_010--Hb_000329_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0441949 0.125725 0.198013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0111787 0.358902

CAGE analysis