Hb_005842_010

Information

Type -
Description -
Location Contig5842: 52927-54382
Sequence    

Annotation

kegg
ID rcu:RCOM_1513380
description nitrate transporter, putative
nr
ID XP_002511509.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LV10
description Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1
trembl
ID B9R934
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1513380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005842_010 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_006242_050 0.0650320325 - - Osmotin precursor, putative [Ricinus communis]
3 Hb_000424_140 0.0658843536 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_007163_110 0.069195005 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
5 Hb_000670_070 0.0727510381 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
6 Hb_009421_070 0.0728259575 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
7 Hb_027472_060 0.0756138742 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
8 Hb_005183_050 0.0777089005 - - hypothetical protein RCOM_1590900 [Ricinus communis]
9 Hb_000329_780 0.0816405162 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
10 Hb_001433_090 0.0820166691 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
11 Hb_000017_180 0.0849519106 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
12 Hb_007483_090 0.0864185261 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008536_020 0.0874805541 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_000002_110 0.0888051082 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
15 Hb_000520_040 0.0888794024 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_002572_040 0.0896638863 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
17 Hb_002600_170 0.0903398429 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000329_440 0.0930030044 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_003152_020 0.093451978 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
20 Hb_026549_060 0.0937076511 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_005842_010 Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_000424_140 Hb_000424_140 Hb_005842_010--Hb_000424_140 Hb_007163_110 Hb_007163_110 Hb_005842_010--Hb_007163_110 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_009421_070 Hb_009421_070 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_143629_170 Hb_143629_170 Hb_006242_050--Hb_143629_170 Hb_003417_050 Hb_003417_050 Hb_006242_050--Hb_003417_050 Hb_128986_010 Hb_128986_010 Hb_006242_050--Hb_128986_010 Hb_006242_050--Hb_007163_110 Hb_007483_090 Hb_007483_090 Hb_006242_050--Hb_007483_090 Hb_005569_010 Hb_005569_010 Hb_000424_140--Hb_005569_010 Hb_000424_140--Hb_000670_070 Hb_000958_090 Hb_000958_090 Hb_000424_140--Hb_000958_090 Hb_000608_190 Hb_000608_190 Hb_000424_140--Hb_000608_190 Hb_000424_140--Hb_009421_070 Hb_003152_020 Hb_003152_020 Hb_007163_110--Hb_003152_020 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_000017_180 Hb_000017_180 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110 Hb_000670_070--Hb_000608_190 Hb_007620_020 Hb_007620_020 Hb_000670_070--Hb_007620_020 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_002245_060 Hb_002245_060 Hb_000670_070--Hb_002245_060 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_001098_040 Hb_001098_040 Hb_009421_070--Hb_001098_040 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0206343 0.116624 0.227103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0179657 0.271693

CAGE analysis