Hb_000031_180

Information

Type -
Description -
Location Contig31: 135842-137077
Sequence    

Annotation

kegg
ID rcu:RCOM_2005550
description sarcosine oxidase, putative (EC:1.5.3.1)
nr
ID XP_002535101.1
description sarcosine oxidase, putative [Ricinus communis]
swissprot
ID Q9SJA7
description Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1
trembl
ID B9TA32
description Sarcosine oxidase, putative OS=Ricinus communis GN=RCOM_2005550 PE=4 SV=1
Gene Ontology
ID GO:0008115
description probable sarcosine oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32789: 135702-137076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_180 0.0 - - sarcosine oxidase, putative [Ricinus communis]
2 Hb_000599_150 0.056103358 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
3 Hb_000329_780 0.0579868174 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
4 Hb_004032_280 0.0626253521 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
5 Hb_027472_060 0.0647856071 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
6 Hb_002119_100 0.0674787435 - - cytochrome B561, putative [Ricinus communis]
7 Hb_006831_090 0.0709124313 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
8 Hb_000904_120 0.0718788436 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015561_010 0.0762608989 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007483_090 0.0773474306 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002374_180 0.0776768283 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
12 Hb_005532_030 0.0794930721 - - DNA binding protein, putative [Ricinus communis]
13 Hb_002572_040 0.0808310675 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
14 Hb_002062_010 0.0815221651 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
15 Hb_003417_050 0.0821273273 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_002600_170 0.0833579255 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005694_160 0.085053383 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000336_290 0.0878792911 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_002740_050 0.0881369683 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
20 Hb_000270_380 0.0888555786 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000031_180 Hb_000031_180 Hb_000599_150 Hb_000599_150 Hb_000031_180--Hb_000599_150 Hb_000329_780 Hb_000329_780 Hb_000031_180--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_000031_180--Hb_004032_280 Hb_027472_060 Hb_027472_060 Hb_000031_180--Hb_027472_060 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_006831_090 Hb_006831_090 Hb_000031_180--Hb_006831_090 Hb_000599_150--Hb_004032_280 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_000329_780--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_000329_780--Hb_002600_170 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_008536_020 Hb_008536_020 Hb_000329_780--Hb_008536_020 Hb_004032_280--Hb_006831_090 Hb_004032_280--Hb_002600_170 Hb_004032_280--Hb_000329_780 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_027472_060--Hb_004032_280 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_027472_060--Hb_000329_780 Hb_027472_060--Hb_002572_040 Hb_027472_060--Hb_000599_150 Hb_002119_100--Hb_007483_090 Hb_002062_010 Hb_002062_010 Hb_002119_100--Hb_002062_010 Hb_003417_050 Hb_003417_050 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_015561_010 Hb_015561_010 Hb_002119_100--Hb_015561_010 Hb_006831_090--Hb_002600_170 Hb_006831_090--Hb_002374_180 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0514623 0.992866 7.62249 12.4147 0.0515893 0.104414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0391646 0.0308082 0.0573967 0.382378 13.6666

CAGE analysis