Hb_027472_060

Information

Type transcription factor
Description TF Family: GRAS
Location Contig27472: 19396-20985
Sequence    

Annotation

kegg
ID rcu:RCOM_1574660
description DELLA protein GAI1, putative
nr
ID XP_002513361.1
description DELLA protein GAI1, putative [Ricinus communis]
swissprot
ID Q9C8Y3
description DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1
trembl
ID B9RHZ2
description DELLA protein GAI1, putative OS=Ricinus communis GN=RCOM_1574660 PE=4 SV=1
Gene Ontology
ID GO:0006351
description della protein rgl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_C11.ab1: 19323-20096

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_060 0.0 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
2 Hb_004032_280 0.0625778048 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
3 Hb_000031_180 0.0647856071 - - sarcosine oxidase, putative [Ricinus communis]
4 Hb_005842_010 0.0756138742 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000329_780 0.0757575383 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
6 Hb_002572_040 0.077535772 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
7 Hb_000599_150 0.0786869332 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
8 Hb_006831_090 0.080155053 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
9 Hb_002600_170 0.0811985939 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006242_050 0.086261086 - - Osmotin precursor, putative [Ricinus communis]
11 Hb_007163_110 0.0867583494 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
12 Hb_008536_020 0.0891822792 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
13 Hb_002374_180 0.0900230175 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
14 Hb_005656_120 0.0936623019 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
15 Hb_001210_060 0.0946631497 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
16 Hb_002740_050 0.0954552897 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
17 Hb_020956_030 0.0972479638 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
18 Hb_003417_050 0.0974210392 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_001500_130 0.0975033302 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_007483_090 0.0978417947 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027472_060 Hb_027472_060 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150 Hb_006831_090 Hb_006831_090 Hb_004032_280--Hb_006831_090 Hb_004032_280--Hb_000599_150 Hb_002600_170 Hb_002600_170 Hb_004032_280--Hb_002600_170 Hb_004032_280--Hb_000329_780 Hb_008536_020 Hb_008536_020 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_000031_180--Hb_000599_150 Hb_000031_180--Hb_000329_780 Hb_000031_180--Hb_004032_280 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_000031_180--Hb_006831_090 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_000424_140 Hb_000424_140 Hb_005842_010--Hb_000424_140 Hb_007163_110 Hb_007163_110 Hb_005842_010--Hb_007163_110 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_009421_070 Hb_009421_070 Hb_005842_010--Hb_009421_070 Hb_000329_780--Hb_006831_090 Hb_000329_780--Hb_002600_170 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_000329_780--Hb_008536_020 Hb_002150_090 Hb_002150_090 Hb_002572_040--Hb_002150_090 Hb_001541_130 Hb_001541_130 Hb_002572_040--Hb_001541_130 Hb_002572_040--Hb_006242_050 Hb_002572_040--Hb_000599_150 Hb_001095_020 Hb_001095_020 Hb_002572_040--Hb_001095_020 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000599_150--Hb_000329_780 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.473798 4.7343 8.02457 0.0128531 0.0127312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0292112 0.0459639 0.0865432 0.513319 9.49396

CAGE analysis