Hb_000599_150

Information

Type -
Description -
Location Contig599: 121185-128741
Sequence    

Annotation

kegg
ID rcu:RCOM_0500130
description Polysialic acid capsule expression protein kpsF, putative (EC:5.3.1.13)
nr
ID XP_012085302.1
description PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
swissprot
ID Q9M1T1
description Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1
trembl
ID A0A067K2N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17678 PE=3 SV=1
Gene Ontology
ID GO:0016853
description probable arabinose 5-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50461: 121602-122934 , PASA_asmbl_50462: 121420-128764 , PASA_asmbl_50463: 121420-128764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_150 0.0 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
2 Hb_004032_280 0.0549807432 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
3 Hb_000031_180 0.056103358 - - sarcosine oxidase, putative [Ricinus communis]
4 Hb_052530_020 0.0676675589 - - cytochrome B5 isoform 1, putative [Ricinus communis]
5 Hb_000329_780 0.0720921985 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
6 Hb_002572_040 0.0770558639 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
7 Hb_007483_090 0.0784986915 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002119_100 0.0785573034 - - cytochrome B561, putative [Ricinus communis]
9 Hb_027472_060 0.0786869332 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
10 Hb_005337_100 0.0810913012 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
11 Hb_002150_090 0.0813598214 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
12 Hb_006831_090 0.0832119373 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
13 Hb_000684_070 0.084371553 - - PREDICTED: uncharacterized protein LOC105642198 isoform X1 [Jatropha curcas]
14 Hb_003417_050 0.0862280803 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_166718_010 0.0893115439 - - heat-shock protein, putative [Ricinus communis]
16 Hb_008536_020 0.0901872195 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_000520_040 0.090322688 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
18 Hb_002066_110 0.0908536608 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
19 Hb_002740_050 0.091713187 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
20 Hb_000336_290 0.0936239483 - - leucine-rich repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_150 Hb_000599_150 Hb_004032_280 Hb_004032_280 Hb_000599_150--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_000599_150--Hb_000031_180 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000329_780 Hb_000329_780 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_006831_090 Hb_006831_090 Hb_004032_280--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_004032_280--Hb_002600_170 Hb_004032_280--Hb_000329_780 Hb_008536_020 Hb_008536_020 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_000031_180--Hb_000329_780 Hb_000031_180--Hb_004032_280 Hb_027472_060 Hb_027472_060 Hb_000031_180--Hb_027472_060 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_000031_180--Hb_006831_090 Hb_000928_030 Hb_000928_030 Hb_052530_020--Hb_000928_030 Hb_004137_040 Hb_004137_040 Hb_052530_020--Hb_004137_040 Hb_002150_090 Hb_002150_090 Hb_052530_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_052530_020--Hb_000028_190 Hb_000103_200 Hb_000103_200 Hb_052530_020--Hb_000103_200 Hb_000329_780--Hb_006831_090 Hb_000329_780--Hb_002600_170 Hb_000329_780--Hb_002119_100 Hb_002374_180 Hb_002374_180 Hb_000329_780--Hb_002374_180 Hb_000329_780--Hb_008536_020 Hb_002572_040--Hb_002150_090 Hb_001541_130 Hb_001541_130 Hb_002572_040--Hb_001541_130 Hb_006242_050 Hb_006242_050 Hb_002572_040--Hb_006242_050 Hb_002572_040--Hb_027472_060 Hb_001095_020 Hb_001095_020 Hb_002572_040--Hb_001095_020 Hb_007483_090--Hb_002119_100 Hb_003417_050 Hb_003417_050 Hb_007483_090--Hb_003417_050 Hb_007483_090--Hb_000329_780 Hb_002062_010 Hb_002062_010 Hb_007483_090--Hb_002062_010 Hb_128986_010 Hb_128986_010 Hb_007483_090--Hb_128986_010 Hb_015561_010 Hb_015561_010 Hb_007483_090--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0436796 1.3369 10.8212 15.1049 0 0.0123988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0856056 0.112252 0.0846023 0.384939 16.1133

CAGE analysis