Hb_001095_020

Information

Type -
Description -
Location Contig1095: 25763-28131
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03510g
description POPTRDRAFT_825046; hypothetical protein
nr
ID XP_012082552.1
description PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
swissprot
ID Q8RY82
description F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1
trembl
ID B9IHQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s03510g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02850: 25744-27999 , PASA_asmbl_02851: 27108-27574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001095_020 0.0 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
2 Hb_001674_010 0.0557576581 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_002150_090 0.0584332191 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
4 Hb_000028_190 0.0626279479 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_004435_020 0.0716376231 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
6 Hb_007163_100 0.0726877947 - - BnaC03g52280D [Brassica napus]
7 Hb_001541_130 0.073989413 - - GDSL esterase/lipase [Morus notabilis]
8 Hb_001544_090 0.0740204219 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_032920_020 0.0748606624 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_002066_110 0.0751324942 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_005976_110 0.0781424638 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
12 Hb_002572_040 0.0799788695 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
13 Hb_001080_190 0.0836578069 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
14 Hb_004137_040 0.0844797443 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
15 Hb_000878_050 0.0854280377 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
16 Hb_008054_030 0.0874146313 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
17 Hb_111985_100 0.0892321186 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_000483_450 0.0911427064 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
19 Hb_051663_010 0.0917268089 - - receptor-kinase, putative [Ricinus communis]
20 Hb_007811_020 0.0921215268 - - PREDICTED: expansin-A6 [Jatropha curcas]

Gene co-expression network

sample Hb_001095_020 Hb_001095_020 Hb_001674_010 Hb_001674_010 Hb_001095_020--Hb_001674_010 Hb_002150_090 Hb_002150_090 Hb_001095_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_001095_020--Hb_000028_190 Hb_004435_020 Hb_004435_020 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_000028_190 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002150_090--Hb_002066_110 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_000028_190--Hb_008054_030 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_000878_050 Hb_000878_050 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_007163_100--Hb_008054_030 Hb_012098_160 Hb_012098_160 Hb_007163_100--Hb_012098_160 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_001541_130--Hb_002150_090 Hb_001541_130--Hb_007811_020 Hb_001541_130--Hb_004435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225491 3.44191 34.6807 46.5403 0.0886864 0.121076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211462 0.0237665 0.268206 2.56039 33.1036

CAGE analysis