Hb_007163_100

Information

Type -
Description -
Location Contig7163: 171636-173418
Sequence    

Annotation

kegg
ID csv:101225798
description kinesin-like protein KIF19-like
nr
ID CDX86958.1
description BnaC03g52280D [Brassica napus]
swissprot
ID P46874
description Kinesin-like protein KLP2 (Fragment) OS=Bombyx mori PE=2 SV=1
trembl
ID A0A078DI16
description Kinesin-like protein OS=Brassica napus GN=BnaC03g52280D PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kif19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_100 0.0 - - BnaC03g52280D [Brassica napus]
2 Hb_002150_090 0.0622286132 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
3 Hb_008054_030 0.0649748869 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
4 Hb_012098_160 0.0670861444 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
5 Hb_000028_190 0.0677882623 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
6 Hb_003339_010 0.0690874822 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
7 Hb_001095_020 0.0726877947 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
8 Hb_001674_010 0.0756735287 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_000904_120 0.0807734802 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002572_040 0.0830405345 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
11 Hb_012484_050 0.0835704553 - - PREDICTED: kinesin KP1 [Jatropha curcas]
12 Hb_015561_010 0.0841032929 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002066_110 0.0842597247 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_008221_200 0.0890939059 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
15 Hb_001032_020 0.0895236693 - - ankyrin repeat protein [Bruguiera gymnorhiza]
16 Hb_005762_010 0.0905981986 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
17 Hb_009023_010 0.0925887932 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
18 Hb_006242_050 0.0929562896 - - Osmotin precursor, putative [Ricinus communis]
19 Hb_005694_160 0.0936882248 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010407_130 0.0946291919 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]

Gene co-expression network

sample Hb_007163_100 Hb_007163_100 Hb_002150_090 Hb_002150_090 Hb_007163_100--Hb_002150_090 Hb_008054_030 Hb_008054_030 Hb_007163_100--Hb_008054_030 Hb_012098_160 Hb_012098_160 Hb_007163_100--Hb_012098_160 Hb_000028_190 Hb_000028_190 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_001095_020 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_001674_010 Hb_001674_010 Hb_002150_090--Hb_001674_010 Hb_008054_030--Hb_003339_010 Hb_008054_030--Hb_000028_190 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_001486_280 Hb_001486_280 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_015561_010 Hb_015561_010 Hb_012098_160--Hb_015561_010 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_000028_190--Hb_001674_010 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_003339_010--Hb_005762_010 Hb_003339_010--Hb_000028_190 Hb_003339_010--Hb_002150_090 Hb_003339_010--Hb_004137_040 Hb_001095_020--Hb_001674_010 Hb_001095_020--Hb_000028_190 Hb_004435_020 Hb_004435_020 Hb_001095_020--Hb_004435_020 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0981744 0.925992 5.54696 8.67447 0 0.0303061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.380413 6.67877

CAGE analysis