Hb_015561_010

Information

Type -
Description -
Location Contig15561: 17257-22920
Sequence    

Annotation

kegg
ID rcu:RCOM_0737410
description hypothetical protein
nr
ID XP_002527560.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID B9SNJ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0737410 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13503: 21055-22647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015561_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002062_010 0.052429784 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_001512_130 0.0575254072 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
4 Hb_002119_100 0.064416929 - - cytochrome B561, putative [Ricinus communis]
5 Hb_009023_010 0.0651581872 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
6 Hb_003417_050 0.0680087322 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_007483_090 0.0702202548 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005656_120 0.0735695805 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
9 Hb_006242_050 0.0746774896 - - Osmotin precursor, putative [Ricinus communis]
10 Hb_000270_380 0.0749061995 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
11 Hb_128986_010 0.0751653673 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000031_180 0.0762608989 - - sarcosine oxidase, putative [Ricinus communis]
13 Hb_000329_780 0.0768914245 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
14 Hb_000904_120 0.0809112767 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000017_180 0.0816632946 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
16 Hb_012098_160 0.082637184 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_005762_010 0.0830484477 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
18 Hb_005694_160 0.0834703844 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007163_100 0.0841032929 - - BnaC03g52280D [Brassica napus]
20 Hb_000500_240 0.0894146138 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015561_010 Hb_015561_010 Hb_002062_010 Hb_002062_010 Hb_015561_010--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_009023_010 Hb_009023_010 Hb_015561_010--Hb_009023_010 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_005656_120 Hb_005656_120 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_002062_010--Hb_002119_100 Hb_001512_130--Hb_002062_010 Hb_001512_130--Hb_000017_180 Hb_136408_040 Hb_136408_040 Hb_001512_130--Hb_136408_040 Hb_001512_130--Hb_005656_120 Hb_001512_130--Hb_009023_010 Hb_002119_100--Hb_007483_090 Hb_000329_780 Hb_000329_780 Hb_002119_100--Hb_000329_780 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_000270_380 Hb_000270_380 Hb_009023_010--Hb_000270_380 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_009023_010--Hb_002062_010 Hb_012098_160 Hb_012098_160 Hb_009023_010--Hb_012098_160 Hb_003417_050--Hb_128986_010 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_007483_090--Hb_128986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.348611 1.94341 3.76632 0.0396108 0.0212046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.128301 3.21782

CAGE analysis