Hb_000017_180

Information

Type -
Description -
Location Contig17: 222415-223907
Sequence    

Annotation

kegg
ID rcu:RCOM_1688040
description hypothetical protein
nr
ID KDP25395.1
description hypothetical protein JCGZ_20551 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20551 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15828: 222774-223595 , PASA_asmbl_15829: 222774-223558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_180 0.0 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
2 Hb_002062_010 0.0561443409 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_005183_050 0.0592977141 - - hypothetical protein RCOM_1590900 [Ricinus communis]
4 Hb_003417_050 0.0655921003 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_005656_120 0.0667137408 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
6 Hb_128986_010 0.0699206733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007483_090 0.0714854159 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007163_110 0.0717180545 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
9 Hb_010589_010 0.0721669799 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
10 Hb_001512_130 0.0744194725 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
11 Hb_002809_180 0.0748928883 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
12 Hb_004459_010 0.0755730725 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
13 Hb_003152_020 0.0768794619 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
14 Hb_001433_090 0.0770092652 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
15 Hb_004650_110 0.0786016983 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
16 Hb_005711_030 0.0789625804 - - hypothetical protein RCOM_0460020 [Ricinus communis]
17 Hb_136408_040 0.0804869065 - - PREDICTED: protein NDR1 [Jatropha curcas]
18 Hb_006242_050 0.0804880283 - - Osmotin precursor, putative [Ricinus communis]
19 Hb_015561_010 0.0816632946 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002119_100 0.0841696898 - - cytochrome B561, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_180 Hb_000017_180 Hb_002062_010 Hb_002062_010 Hb_000017_180--Hb_002062_010 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_003417_050 Hb_003417_050 Hb_000017_180--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000017_180--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_000017_180--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_000017_180--Hb_007483_090 Hb_002062_010--Hb_128986_010 Hb_015561_010 Hb_015561_010 Hb_002062_010--Hb_015561_010 Hb_002062_010--Hb_005656_120 Hb_002062_010--Hb_003417_050 Hb_002119_100 Hb_002119_100 Hb_002062_010--Hb_002119_100 Hb_001433_090 Hb_001433_090 Hb_005183_050--Hb_001433_090 Hb_000002_110 Hb_000002_110 Hb_005183_050--Hb_000002_110 Hb_003152_020 Hb_003152_020 Hb_005183_050--Hb_003152_020 Hb_026549_060 Hb_026549_060 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_003417_050--Hb_128986_010 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002119_100 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_005656_120--Hb_128986_010 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_007483_090 Hb_007483_090--Hb_002119_100 Hb_000329_780 Hb_000329_780 Hb_007483_090--Hb_000329_780 Hb_007483_090--Hb_002062_010 Hb_007483_090--Hb_015561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23 1.28282 3.45038 0 0.0227429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0906485 3.24206

CAGE analysis