Hb_003152_020

Information

Type -
Description -
Location Contig3152: 36779-46264
Sequence    

Annotation

kegg
ID pmum:103336723
description neutral alpha-glucosidase C
nr
ID XP_012070491.1
description PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
swissprot
ID Q9F234
description Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1
trembl
ID M5WQJ8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000927mg PE=3 SV=1
Gene Ontology
ID GO:0004553
description neutral alpha-glucosidase c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33245: 44768-46252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003152_020 0.0 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
2 Hb_001397_020 0.062127388 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_007163_110 0.0622705997 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_136408_040 0.0655259964 - - PREDICTED: protein NDR1 [Jatropha curcas]
5 Hb_010589_010 0.0701949175 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
6 Hb_002809_180 0.0705874602 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
7 Hb_005000_150 0.0721333861 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005183_050 0.0756328328 - - hypothetical protein RCOM_1590900 [Ricinus communis]
9 Hb_000017_180 0.0768794619 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
10 Hb_001433_090 0.0772334932 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
11 Hb_004650_110 0.0775338728 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
12 Hb_001289_070 0.0792646612 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_001657_020 0.0796318465 - - heat shock family protein [Populus trichocarpa]
14 Hb_000103_440 0.0798179255 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
15 Hb_001408_200 0.0806086159 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
16 Hb_015807_130 0.0810748219 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
17 Hb_000076_240 0.0813209131 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
18 Hb_001140_290 0.0822032967 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
19 Hb_002151_070 0.0851915844 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
20 Hb_000002_110 0.0856864612 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]

Gene co-expression network

sample Hb_003152_020 Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_003549_100 Hb_003549_100 Hb_001397_020--Hb_003549_100 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_002809_180 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_007163_110--Hb_136408_040 Hb_000017_180 Hb_000017_180 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_010589_010--Hb_003549_100 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_005000_150--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_005000_150--Hb_002151_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_005000_150--Hb_001397_020 Hb_001289_070 Hb_001289_070 Hb_005000_150--Hb_001289_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0327248 0.454754 2.15652 7.38763 0.0261999 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.323351 7.7283

CAGE analysis