Hb_004650_110

Information

Type -
Description -
Location Contig4650: 93443-100093
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08760g
description hypothetical protein
nr
ID XP_006386379.1
description hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
swissprot
ID P50699
description Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2
trembl
ID U5GP76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44033: 94051-94233 , PASA_asmbl_44034: 99276-100036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_110 0.0 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
2 Hb_002809_180 0.0713234199 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
3 Hb_007163_110 0.0747091502 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_003152_020 0.0775338728 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
5 Hb_000017_180 0.0786016983 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
6 Hb_001289_070 0.0811834696 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_128986_010 0.0828515635 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005711_030 0.083986776 - - hypothetical protein RCOM_0460020 [Ricinus communis]
9 Hb_143629_170 0.0841103372 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
10 Hb_000103_440 0.0869375684 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
11 Hb_009252_070 0.0877650883 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
12 Hb_010172_040 0.0881212786 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
13 Hb_015807_130 0.0890427593 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_003417_050 0.0897393949 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002062_010 0.0908375183 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_000364_090 0.0932488922 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
17 Hb_001688_050 0.0937227748 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
18 Hb_005656_120 0.0956479079 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_005269_060 0.0966543759 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
20 Hb_006242_050 0.0979069472 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004650_110 Hb_004650_110 Hb_002809_180 Hb_002809_180 Hb_004650_110--Hb_002809_180 Hb_007163_110 Hb_007163_110 Hb_004650_110--Hb_007163_110 Hb_003152_020 Hb_003152_020 Hb_004650_110--Hb_003152_020 Hb_000017_180 Hb_000017_180 Hb_004650_110--Hb_000017_180 Hb_001289_070 Hb_001289_070 Hb_004650_110--Hb_001289_070 Hb_128986_010 Hb_128986_010 Hb_004650_110--Hb_128986_010 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_007163_110--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_007163_110--Hb_000017_180 Hb_003152_020--Hb_001397_020 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_002062_010 Hb_002062_010 Hb_000017_180--Hb_002062_010 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_003417_050 Hb_003417_050 Hb_000017_180--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000017_180--Hb_005656_120 Hb_000017_180--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_000017_180--Hb_007483_090 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_001289_070--Hb_005000_150 Hb_001289_070--Hb_003152_020 Hb_000813_070 Hb_000813_070 Hb_001289_070--Hb_000813_070 Hb_002151_070 Hb_002151_070 Hb_001289_070--Hb_002151_070 Hb_128986_010--Hb_002062_010 Hb_128986_010--Hb_003417_050 Hb_143629_170 Hb_143629_170 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_128986_010--Hb_005656_120 Hb_128986_010--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111399 0.160178 0.961461 3.31581 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0253368 0 0 0.111151 2.60357

CAGE analysis