Hb_003549_100

Information

Type -
Description -
Location Contig3549: 93821-94300
Sequence    

Annotation

kegg
ID rcu:RCOM_1435680
description hypothetical protein
nr
ID XP_012088865.1
description PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23201 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36777: 93754-94491
cDNA
(Sanger)
(ID:Location)		 020_A21.ab1: 93754-94433 , 022_B10.ab1: 93754-94316 , 024_P13.ab1: 93754-94414 , 025_D14.ab1: 93754-94410 , 036_H16.ab1: 93754-94409 , 043_M07.ab1: 93754-94409

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_100 0.0 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
2 Hb_001397_020 0.0505329012 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_132880_010 0.0616492988 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_029587_010 0.0650850734 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
5 Hb_010589_010 0.0656039638 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
6 Hb_002809_180 0.0677277605 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
7 Hb_095744_010 0.0688061866 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
8 Hb_010883_160 0.069465016 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
9 Hb_000076_240 0.0707736963 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
10 Hb_000029_210 0.0758467538 - - protein binding protein, putative [Ricinus communis]
11 Hb_001097_170 0.0773207813 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_000172_270 0.0795312003 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
13 Hb_001163_010 0.0809595754 - - PREDICTED: syncoilin [Jatropha curcas]
14 Hb_008518_060 0.0815610771 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
15 Hb_144550_010 0.0821538793 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
16 Hb_001053_120 0.082450153 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
17 Hb_000917_300 0.0866345069 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
18 Hb_010172_040 0.088100604 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_004459_010 0.0890079064 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
20 Hb_003025_170 0.08919917 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]

Gene co-expression network

sample Hb_003549_100 Hb_003549_100 Hb_001397_020 Hb_001397_020 Hb_003549_100--Hb_001397_020 Hb_132880_010 Hb_132880_010 Hb_003549_100--Hb_132880_010 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_010589_010 Hb_010589_010 Hb_003549_100--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003549_100--Hb_002809_180 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_002073_130 Hb_002073_130 Hb_132880_010--Hb_002073_130 Hb_132880_010--Hb_095744_010 Hb_144550_010 Hb_144550_010 Hb_132880_010--Hb_144550_010 Hb_002326_010 Hb_002326_010 Hb_132880_010--Hb_002326_010 Hb_001593_040 Hb_001593_040 Hb_132880_010--Hb_001593_040 Hb_029587_010--Hb_010589_010 Hb_002477_190 Hb_002477_190 Hb_029587_010--Hb_002477_190 Hb_001711_140 Hb_001711_140 Hb_029587_010--Hb_001711_140 Hb_029587_010--Hb_144550_010 Hb_029587_010--Hb_001397_020 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_004459_010 Hb_004459_010 Hb_095744_010--Hb_004459_010 Hb_095744_010--Hb_144550_010 Hb_000917_300 Hb_000917_300 Hb_095744_010--Hb_000917_300 Hb_095744_010--Hb_010589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.8353 488.951 1810.76 0.115228 0.243335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43642 0.338515 0 16.9085 2132.48

CAGE analysis