Hb_010589_010

Information

Type -
Description -
Location Contig10589: 12206-13789
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012093079.1
description PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01921: 12169-14242 , PASA_asmbl_01922: 12930-13575
cDNA
(Sanger)
(ID:Location)		 004_L08.ab1: 12646-13995 , 027_E17.ab1: 12173-12696 , 033_B12.ab1: 12174-12803 , 035_K22.ab1: 12646-13995 , 048_P12.ab1: 12646-13995 , 053_E19.ab1: 12646-13995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_010 0.0 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
2 Hb_001397_020 0.0511700355 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_029587_010 0.0569119154 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
4 Hb_001433_090 0.0581764284 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
5 Hb_003549_100 0.0656039638 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
6 Hb_000002_110 0.0662606309 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
7 Hb_001500_130 0.0693567326 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
8 Hb_002809_180 0.0694615681 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
9 Hb_003152_020 0.0701949175 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
10 Hb_000017_180 0.0721669799 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
11 Hb_001140_290 0.0745352235 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
12 Hb_000917_300 0.074535937 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
13 Hb_095744_010 0.0788062903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
14 Hb_002477_190 0.080610641 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
15 Hb_005183_050 0.0812179466 - - hypothetical protein RCOM_1590900 [Ricinus communis]
16 Hb_005000_150 0.0813920184 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004459_010 0.0817811349 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_002062_010 0.0862591862 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_000076_240 0.0865535004 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
20 Hb_001048_010 0.0875847243 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_010589_010 Hb_010589_010 Hb_001397_020 Hb_001397_020 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_000002_110 Hb_000002_110 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_001397_020--Hb_003549_100 Hb_002809_180 Hb_002809_180 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_001397_020--Hb_000002_110 Hb_029587_010--Hb_003549_100 Hb_002477_190 Hb_002477_190 Hb_029587_010--Hb_002477_190 Hb_001711_140 Hb_001711_140 Hb_029587_010--Hb_001711_140 Hb_144550_010 Hb_144550_010 Hb_029587_010--Hb_144550_010 Hb_029587_010--Hb_001397_020 Hb_026549_060 Hb_026549_060 Hb_001433_090--Hb_026549_060 Hb_001433_090--Hb_000002_110 Hb_005183_050 Hb_005183_050 Hb_001433_090--Hb_005183_050 Hb_001433_090--Hb_001500_130 Hb_020956_030 Hb_020956_030 Hb_001433_090--Hb_020956_030 Hb_132880_010 Hb_132880_010 Hb_003549_100--Hb_132880_010 Hb_003549_100--Hb_002809_180 Hb_095744_010 Hb_095744_010 Hb_003549_100--Hb_095744_010 Hb_000002_110--Hb_001500_130 Hb_000002_110--Hb_005183_050 Hb_000002_110--Hb_020956_030 Hb_005010_030 Hb_005010_030 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_001500_130--Hb_002477_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29887 41.8081 208.169 636.669 0.886552 0.101281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0679184 0 5.5664 711.938

CAGE analysis