Hb_000083_210

Information

Type -
Description -
Location Contig83: 290553-293789
Sequence    

Annotation

kegg
ID tcc:TCM_021731
description Major facilitator superfamily protein, putative
nr
ID XP_007026766.1
description Major facilitator superfamily protein, putative [Theobroma cacao]
swissprot
ID P0CI03
description Protein NRT1/ PTR FAMILY 5.6 OS=Arabidopsis thaliana GN=NPF5.6 PE=2 SV=1
trembl
ID A0A061ERJ4
description Major facilitator superfamily protein, putative OS=Theobroma cacao GN=TCM_021731 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59788: 284518-293644 , PASA_asmbl_59789: 290380-293644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_210 0.0 - - Major facilitator superfamily protein, putative [Theobroma cacao]
2 Hb_000749_300 0.0690317975 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
3 Hb_001500_130 0.0809487566 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
4 Hb_005010_030 0.0852638313 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
5 Hb_002246_030 0.0891280056 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_001047_210 0.0895043251 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_001433_090 0.0944383561 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
8 Hb_001541_200 0.0949220554 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
9 Hb_026549_060 0.0955867912 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_005183_050 0.0969166429 - - hypothetical protein RCOM_1590900 [Ricinus communis]
11 Hb_000031_180 0.0970488882 - - sarcosine oxidase, putative [Ricinus communis]
12 Hb_005843_010 0.09727496 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
13 Hb_000002_110 0.1016850154 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
14 Hb_000462_010 0.1017362227 - - hypothetical protein VITISV_041696 [Vitis vinifera]
15 Hb_185726_010 0.1028553561 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
16 Hb_000358_090 0.1036663631 - - zinc finger protein, putative [Ricinus communis]
17 Hb_001210_060 0.1063386167 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
18 Hb_020956_030 0.1065626432 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
19 Hb_005694_160 0.1066520457 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007483_090 0.1070937657 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000083_210 Hb_000083_210 Hb_000749_300 Hb_000749_300 Hb_000083_210--Hb_000749_300 Hb_001500_130 Hb_001500_130 Hb_000083_210--Hb_001500_130 Hb_005010_030 Hb_005010_030 Hb_000083_210--Hb_005010_030 Hb_002246_030 Hb_002246_030 Hb_000083_210--Hb_002246_030 Hb_001047_210 Hb_001047_210 Hb_000083_210--Hb_001047_210 Hb_001433_090 Hb_001433_090 Hb_000083_210--Hb_001433_090 Hb_001902_040 Hb_001902_040 Hb_000749_300--Hb_001902_040 Hb_002986_030 Hb_002986_030 Hb_000749_300--Hb_002986_030 Hb_185726_010 Hb_185726_010 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_015934_090 Hb_015934_090 Hb_000749_300--Hb_015934_090 Hb_001500_130--Hb_001433_090 Hb_000002_110 Hb_000002_110 Hb_001500_130--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001500_130--Hb_010589_010 Hb_001500_130--Hb_005010_030 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190 Hb_001711_140 Hb_001711_140 Hb_005010_030--Hb_001711_140 Hb_005010_030--Hb_002477_190 Hb_005010_030--Hb_000462_010 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005843_010 Hb_005843_010 Hb_005010_030--Hb_005843_010 Hb_102179_010 Hb_102179_010 Hb_002246_030--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_002246_030--Hb_001047_210 Hb_000500_240 Hb_000500_240 Hb_002246_030--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_000520_040 Hb_000520_040 Hb_001047_210--Hb_000520_040 Hb_001047_210--Hb_102179_010 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_001047_210--Hb_000500_240 Hb_001433_090--Hb_026549_060 Hb_001433_090--Hb_000002_110 Hb_001433_090--Hb_010589_010 Hb_005183_050 Hb_005183_050 Hb_001433_090--Hb_005183_050 Hb_020956_030 Hb_020956_030 Hb_001433_090--Hb_020956_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377379 1.13736 3.13175 6.47783 0 0.0399174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0543953 0.0509174 0.108701 7.76493

CAGE analysis