Hb_005694_160

Information

Type -
Description -
Location Contig5694: 121132-122478
Sequence    

Annotation

kegg
ID rcu:RCOM_0144270
description hypothetical protein
nr
ID XP_002533331.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T512
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0144270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49253: 121068-122819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000500_240 0.0471070105 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002246_030 0.0687412697 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_000520_040 0.0706566699 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_000329_440 0.0733462856 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
6 Hb_102179_010 0.0750215584 - - protein binding protein, putative [Ricinus communis]
7 Hb_015561_010 0.0834703844 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000904_120 0.0846492201 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_180 0.085053383 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_002066_110 0.0854325044 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
11 Hb_012098_160 0.0855189431 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
12 Hb_002572_040 0.0861355892 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
13 Hb_000718_060 0.0874456475 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
14 Hb_001047_210 0.0874502511 - - PSI reaction center subunit II [Citrus sinensis]
15 Hb_000046_120 0.0875482382 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_000329_780 0.0881474971 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
17 Hb_060253_010 0.0912201143 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
18 Hb_001098_040 0.0933905803 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
19 Hb_007163_100 0.0936882248 - - BnaC03g52280D [Brassica napus]
20 Hb_005337_100 0.0937192178 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]

Gene co-expression network

sample Hb_005694_160 Hb_005694_160 Hb_000500_240 Hb_000500_240 Hb_005694_160--Hb_000500_240 Hb_002246_030 Hb_002246_030 Hb_005694_160--Hb_002246_030 Hb_000520_040 Hb_000520_040 Hb_005694_160--Hb_000520_040 Hb_000329_440 Hb_000329_440 Hb_005694_160--Hb_000329_440 Hb_102179_010 Hb_102179_010 Hb_005694_160--Hb_102179_010 Hb_015561_010 Hb_015561_010 Hb_005694_160--Hb_015561_010 Hb_000500_240--Hb_000520_040 Hb_000500_240--Hb_000329_440 Hb_000500_240--Hb_102179_010 Hb_001047_210 Hb_001047_210 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_002246_030--Hb_102179_010 Hb_002246_030--Hb_001047_210 Hb_002246_030--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_000520_040--Hb_001047_210 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_000329_440--Hb_004835_020 Hb_000329_440--Hb_102179_010 Hb_102179_010--Hb_004835_020 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_102179_010--Hb_001047_210 Hb_102179_010--Hb_000520_040 Hb_002062_010 Hb_002062_010 Hb_015561_010--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_015561_010--Hb_001512_130 Hb_002119_100 Hb_002119_100 Hb_015561_010--Hb_002119_100 Hb_009023_010 Hb_009023_010 Hb_015561_010--Hb_009023_010 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0965614 8.68303 33.3791 46.2002 0.342373 0.344931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0353841 0.0556718 0 2.58184 52.3324

CAGE analysis