Hb_000520_040

Information

Type -
Description -
Location Contig520: 60794-63229
Sequence    

Annotation

kegg
ID rcu:RCOM_1576600
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012087443.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9RI65
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1576600 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000520_040 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
2 Hb_000500_240 0.0450979183 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001047_210 0.0574666072 - - PSI reaction center subunit II [Citrus sinensis]
4 Hb_000329_440 0.0580573745 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
5 Hb_008536_020 0.0595536791 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
6 Hb_005337_100 0.0624107043 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
7 Hb_060253_010 0.0676201426 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
8 Hb_005694_160 0.0706566699 - - conserved hypothetical protein [Ricinus communis]
9 Hb_102179_010 0.0708689305 - - protein binding protein, putative [Ricinus communis]
10 Hb_000329_780 0.0729008904 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
11 Hb_004835_020 0.0767319146 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_000046_120 0.0833792422 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
13 Hb_003435_030 0.0847951041 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_005569_010 0.0850712885 - - Heme-binding protein, putative [Ricinus communis]
15 Hb_002600_170 0.0864314144 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002246_030 0.0865017034 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000424_140 0.0866078355 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_008847_050 0.0866551722 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006831_090 0.0867100499 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
20 Hb_005842_010 0.0888794024 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000520_040 Hb_000520_040 Hb_000500_240 Hb_000500_240 Hb_000520_040--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_000520_040--Hb_001047_210 Hb_000329_440 Hb_000329_440 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_005694_160 Hb_005694_160 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_102179_010 Hb_102179_010 Hb_000500_240--Hb_102179_010 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_001047_210--Hb_102179_010 Hb_002246_030 Hb_002246_030 Hb_001047_210--Hb_002246_030 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_001098_040 Hb_001098_040 Hb_000329_440--Hb_001098_040 Hb_004835_020 Hb_004835_020 Hb_000329_440--Hb_004835_020 Hb_000329_440--Hb_102179_010 Hb_000329_440--Hb_005694_160 Hb_002600_170 Hb_002600_170 Hb_008536_020--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_008536_020--Hb_006831_090 Hb_008536_020--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_008536_020--Hb_004032_280 Hb_002374_180 Hb_002374_180 Hb_008536_020--Hb_002374_180 Hb_005337_100--Hb_008536_020 Hb_005337_100--Hb_000500_240 Hb_005337_100--Hb_000329_780 Hb_084303_010 Hb_084303_010 Hb_005337_100--Hb_084303_010 Hb_004635_120 Hb_004635_120 Hb_005337_100--Hb_004635_120 Hb_003435_030 Hb_003435_030 Hb_060253_010--Hb_003435_030 Hb_007270_020 Hb_007270_020 Hb_060253_010--Hb_007270_020 Hb_000046_120 Hb_000046_120 Hb_060253_010--Hb_000046_120 Hb_000212_410 Hb_000212_410 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.359205 1.84063 2.19381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119276 3.03789

CAGE analysis