Hb_001047_210

Information

Type -
Description -
Location Contig1047: 114200-114817
Sequence    

Annotation

kegg
ID cit:102577962
description PSADA; PSI reaction center subunit II
nr
ID NP_001275788.1
description PSI reaction center subunit II [Citrus sinensis]
swissprot
ID P32869
description Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1
trembl
ID A8C1B5
description PSI reaction center subunit II OS=Citrus sinensis GN=psaDa PE=2 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01625: 110825-113287 , PASA_asmbl_01627: 114134-114952
cDNA
(Sanger)
(ID:Location)		 014_P01.ab1: 114555-114834 , 021_L21.ab1: 114134-114909 , 044_I19.ab1: 114170-114900 , 051_M20.ab1: 114181-114867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_210 0.0 - - PSI reaction center subunit II [Citrus sinensis]
2 Hb_000520_040 0.0574666072 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_102179_010 0.0698733961 - - protein binding protein, putative [Ricinus communis]
4 Hb_002246_030 0.0711190596 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_000958_090 0.0715568303 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
6 Hb_008847_050 0.0727009523 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000500_240 0.072710948 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005010_030 0.0739979632 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
9 Hb_000329_440 0.0777037404 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
10 Hb_006615_090 0.0778479791 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
11 Hb_004835_020 0.0785866777 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
12 Hb_008536_020 0.07882637 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
13 Hb_002259_090 0.0812585793 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
14 Hb_001141_100 0.0821475111 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
15 Hb_001199_110 0.085225754 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
16 Hb_026549_060 0.0861468005 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_005694_160 0.0874502511 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000083_210 0.0895043251 - - Major facilitator superfamily protein, putative [Theobroma cacao]
19 Hb_000329_780 0.0916417816 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
20 Hb_005569_010 0.0925100148 - - Heme-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001047_210 Hb_001047_210 Hb_000520_040 Hb_000520_040 Hb_001047_210--Hb_000520_040 Hb_102179_010 Hb_102179_010 Hb_001047_210--Hb_102179_010 Hb_002246_030 Hb_002246_030 Hb_001047_210--Hb_002246_030 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_000500_240 Hb_000500_240 Hb_001047_210--Hb_000500_240 Hb_000520_040--Hb_000500_240 Hb_000329_440 Hb_000329_440 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_004835_020 Hb_004835_020 Hb_102179_010--Hb_004835_020 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_102179_010--Hb_000500_240 Hb_102179_010--Hb_000520_040 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_002246_030--Hb_000500_240 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_000424_140 Hb_000424_140 Hb_000958_090--Hb_000424_140 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_005569_010 Hb_005569_010 Hb_000958_090--Hb_005569_010 Hb_002259_090 Hb_002259_090 Hb_008847_050--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_008847_050--Hb_009193_070 Hb_001141_100 Hb_001141_100 Hb_008847_050--Hb_001141_100 Hb_001277_130 Hb_001277_130 Hb_008847_050--Hb_001277_130 Hb_028491_010 Hb_028491_010 Hb_008847_050--Hb_028491_010 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272346 53.4141 222.245 290.024 0.123012 0.0973774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.289982 0.607772 0.400318 7.43347 450.054

CAGE analysis