Hb_002182_010

Information

Type -
Description -
Location Contig2182: 5080-7246
Sequence    

Annotation

kegg
ID rcu:RCOM_0736050
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012075168.1
description PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
swissprot
ID P52409
description Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1
trembl
ID A0A067KJM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09352 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22490: 5857-6157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
2 Hb_102179_010 0.0670035556 - - protein binding protein, putative [Ricinus communis]
3 Hb_033363_040 0.0818200372 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
4 Hb_002246_030 0.0874641581 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_004835_020 0.0903275477 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_001047_210 0.0994235302 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_000500_240 0.102599115 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000002_500 0.1028306218 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
9 Hb_008412_040 0.1032867939 - - unnamed protein product [Vitis vinifera]
10 Hb_002259_090 0.1044244147 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
11 Hb_005694_120 0.1053017381 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
12 Hb_018591_020 0.1062248752 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_000046_120 0.1065723574 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
14 Hb_008847_050 0.1072786948 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000520_040 0.1094350163 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_011214_130 0.1095451309 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
17 Hb_001942_010 0.1102233446 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
18 Hb_025557_060 0.1121287473 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
19 Hb_001141_100 0.1122810376 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
20 Hb_000336_290 0.112915837 - - leucine-rich repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002182_010 Hb_002182_010 Hb_102179_010 Hb_102179_010 Hb_002182_010--Hb_102179_010 Hb_033363_040 Hb_033363_040 Hb_002182_010--Hb_033363_040 Hb_002246_030 Hb_002246_030 Hb_002182_010--Hb_002246_030 Hb_004835_020 Hb_004835_020 Hb_002182_010--Hb_004835_020 Hb_001047_210 Hb_001047_210 Hb_002182_010--Hb_001047_210 Hb_000500_240 Hb_000500_240 Hb_002182_010--Hb_000500_240 Hb_102179_010--Hb_004835_020 Hb_102179_010--Hb_002246_030 Hb_102179_010--Hb_000500_240 Hb_102179_010--Hb_001047_210 Hb_000520_040 Hb_000520_040 Hb_102179_010--Hb_000520_040 Hb_018591_020 Hb_018591_020 Hb_033363_040--Hb_018591_020 Hb_002007_220 Hb_002007_220 Hb_033363_040--Hb_002007_220 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_033363_040--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_033363_040--Hb_003494_090 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_002246_030--Hb_001047_210 Hb_002246_030--Hb_000500_240 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_005569_010 Hb_005569_010 Hb_004835_020--Hb_005569_010 Hb_000329_440 Hb_000329_440 Hb_004835_020--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_004835_020--Hb_000958_090 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210 Hb_001047_210--Hb_000520_040 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_001047_210--Hb_000500_240 Hb_000500_240--Hb_000520_040 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0268645 0.641094 2.28134 2.25123 0.114971 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0960552 4.28343

CAGE analysis