Hb_033363_040

Information

Type -
Description -
Location Contig33363: 30799-31866
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13960g
description POPTRDRAFT_658937; hypothetical protein
nr
ID XP_012082028.1
description PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
swissprot
ID Q0V7R1
description Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1
trembl
ID A0A067KC09
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_18285 PE=3 SV=1
Gene Ontology
ID GO:0047262
description probable galacturonosyltransferase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_040 0.0 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
2 Hb_018591_020 0.0651707617 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_002007_220 0.0654860747 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_003025_160 0.0659806272 - - Protein HVA22, putative [Ricinus communis]
5 Hb_004970_060 0.0695266237 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
6 Hb_002259_090 0.0776968183 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
7 Hb_003494_090 0.0815083404 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
8 Hb_001946_120 0.0816191641 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
9 Hb_011214_130 0.0818102714 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
10 Hb_002182_010 0.0818200372 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
11 Hb_000046_120 0.0821886841 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
12 Hb_001942_010 0.0851949775 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
13 Hb_002852_010 0.0873003709 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_000254_130 0.0878420169 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
15 Hb_005694_120 0.0881940089 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_012395_090 0.0909287577 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
17 Hb_102179_010 0.0917312711 - - protein binding protein, putative [Ricinus communis]
18 Hb_008225_050 0.0936690747 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
19 Hb_004994_030 0.09458521 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
20 Hb_004835_020 0.0957518456 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_033363_040 Hb_033363_040 Hb_018591_020 Hb_018591_020 Hb_033363_040--Hb_018591_020 Hb_002007_220 Hb_002007_220 Hb_033363_040--Hb_002007_220 Hb_003025_160 Hb_003025_160 Hb_033363_040--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_033363_040--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_033363_040--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_033363_040--Hb_003494_090 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_000155_020 Hb_000155_020 Hb_002007_220--Hb_000155_020 Hb_002007_220--Hb_003494_090 Hb_000270_090 Hb_000270_090 Hb_002007_220--Hb_000270_090 Hb_001321_010 Hb_001321_010 Hb_002007_220--Hb_001321_010 Hb_008225_050 Hb_008225_050 Hb_003025_160--Hb_008225_050 Hb_000254_130 Hb_000254_130 Hb_003025_160--Hb_000254_130 Hb_003025_160--Hb_004970_060 Hb_003025_160--Hb_002259_090 Hb_007537_040 Hb_007537_040 Hb_003025_160--Hb_007537_040 Hb_001999_230 Hb_001999_230 Hb_003025_160--Hb_001999_230 Hb_004970_060--Hb_008225_050 Hb_004970_060--Hb_007537_040 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_000460_040 Hb_000460_040 Hb_003494_090--Hb_000460_040 Hb_002852_010 Hb_002852_010 Hb_003494_090--Hb_002852_010 Hb_005329_010 Hb_005329_010 Hb_003494_090--Hb_005329_010 Hb_003494_090--Hb_018591_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127608 9.05834 50.6336 33.064 0.905844 0.152031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0467194 0.0367469 0 2.53789 76.1947

CAGE analysis