Hb_000046_120

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig46: 93792-98201
Sequence    

Annotation

kegg
ID rcu:RCOM_0679170
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID AAS94123.1
description putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
swissprot
ID O78328
description Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1
trembl
ID A1KXW4
description Putative 1-deoxy-D-xylulose 5-phosphate synthase OS=Hevea brasiliensis GN=DXS PE=2 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43615: 93791-98200 , PASA_asmbl_43616: 93791-97923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_120 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
2 Hb_003435_030 0.0489160072 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_001942_010 0.0533735185 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
4 Hb_018591_020 0.0609950362 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_000002_500 0.0659498553 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
6 Hb_060253_010 0.0703305912 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
7 Hb_012395_090 0.075254577 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
8 Hb_102179_010 0.0778883428 - - protein binding protein, putative [Ricinus communis]
9 Hb_002702_010 0.0789823016 - - carbohydrate binding protein, putative [Ricinus communis]
10 Hb_001750_020 0.0806230744 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
11 Hb_010136_010 0.0816013999 - - Putative receptor-like protein kinase [Glycine soja]
12 Hb_033363_040 0.0821886841 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
13 Hb_000520_040 0.0833792422 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
14 Hb_005337_100 0.0853955977 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
15 Hb_005694_160 0.0875482382 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000500_240 0.0878037616 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002007_220 0.0893572773 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_001051_010 0.0901881164 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
19 Hb_004835_020 0.0902357468 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_002818_150 0.0933666092 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]

Gene co-expression network

sample Hb_000046_120 Hb_000046_120 Hb_003435_030 Hb_003435_030 Hb_000046_120--Hb_003435_030 Hb_001942_010 Hb_001942_010 Hb_000046_120--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_003435_030--Hb_060253_010 Hb_010136_010 Hb_010136_010 Hb_003435_030--Hb_010136_010 Hb_003435_030--Hb_001942_010 Hb_003435_030--Hb_018591_020 Hb_002702_010 Hb_002702_010 Hb_003435_030--Hb_002702_010 Hb_001942_010--Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_001942_010--Hb_002702_010 Hb_001942_010--Hb_010136_010 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_018591_020--Hb_000002_500 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_000002_500--Hb_003435_030 Hb_007270_020 Hb_007270_020 Hb_060253_010--Hb_007270_020 Hb_000520_040 Hb_000520_040 Hb_060253_010--Hb_000520_040 Hb_000212_410 Hb_000212_410 Hb_060253_010--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_060253_010--Hb_009788_020 Hb_012395_090--Hb_011013_040 Hb_012395_090--Hb_002702_010 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109225 11.4548 50.7989 41.7255 0.126804 0.197597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0831432 0.0785104 0.0749194 2.623 63.5772

CAGE analysis