Hb_001115_070

Information

Type -
Description -
Location Contig1115: 102444-103710
Sequence    

Annotation

kegg
ID tcc:TCM_038951
description CASP-like protein XL3
nr
ID B9IM09.2
description RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
swissprot
ID B9IM09
description CASP-like protein 2C1 OS=Populus trichocarpa GN=POPTRDRAFT_578614 PE=3 SV=2
trembl
ID A0A067KX28
description CASP-like protein OS=Jatropha curcas GN=JCGZ_08683 PE=3 SV=1
Gene Ontology
ID GO:0005576
description casp-like protein 2c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03509: 102416-103505 , PASA_asmbl_03510: 102416-103677 , PASA_asmbl_03511: 102416-103675 , PASA_asmbl_03512: 102416-103675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_070 0.0 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
2 Hb_002284_160 0.0283080936 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
3 Hb_127629_010 0.0699144995 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
4 Hb_000002_500 0.074611542 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
5 Hb_010136_010 0.0747471551 - - Putative receptor-like protein kinase [Glycine soja]
6 Hb_004017_030 0.0852603109 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
7 Hb_018591_020 0.0885741442 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_003435_030 0.0923649989 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004117_380 0.0940232028 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
10 Hb_008412_040 0.0941559519 - - unnamed protein product [Vitis vinifera]
11 Hb_000815_090 0.0954148212 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
12 Hb_025557_060 0.0966789331 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
13 Hb_003209_150 0.0970056321 - - CLE9, putative [Ricinus communis]
14 Hb_002007_220 0.0981527351 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_000046_120 0.0995321107 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_000155_020 0.1005018167 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002842_010 0.1016853438 - - sulfate transporter, putative [Ricinus communis]
18 Hb_132840_170 0.1024586785 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
19 Hb_001942_010 0.1053179944 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
20 Hb_012395_090 0.1069594713 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001115_070 Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_001115_070--Hb_002284_160 Hb_127629_010 Hb_127629_010 Hb_001115_070--Hb_127629_010 Hb_000002_500 Hb_000002_500 Hb_001115_070--Hb_000002_500 Hb_010136_010 Hb_010136_010 Hb_001115_070--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_001115_070--Hb_004017_030 Hb_018591_020 Hb_018591_020 Hb_001115_070--Hb_018591_020 Hb_002284_160--Hb_000002_500 Hb_002284_160--Hb_004017_030 Hb_002284_160--Hb_010136_010 Hb_002284_160--Hb_127629_010 Hb_000815_090 Hb_000815_090 Hb_002284_160--Hb_000815_090 Hb_008412_040 Hb_008412_040 Hb_127629_010--Hb_008412_040 Hb_004117_380 Hb_004117_380 Hb_127629_010--Hb_004117_380 Hb_127629_010--Hb_000002_500 Hb_127629_010--Hb_010136_010 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_000002_500--Hb_018591_020 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_010136_010--Hb_003435_030 Hb_000155_020 Hb_000155_020 Hb_010136_010--Hb_000155_020 Hb_011013_040 Hb_011013_040 Hb_010136_010--Hb_011013_040 Hb_010136_010--Hb_004017_030 Hb_012395_090 Hb_012395_090 Hb_010136_010--Hb_012395_090 Hb_007462_020 Hb_007462_020 Hb_004017_030--Hb_007462_020 Hb_004017_030--Hb_000155_020 Hb_001369_340 Hb_001369_340 Hb_004017_030--Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_004017_030--Hb_003767_060 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0315937 101.278 261.046 176.3 0.0296416 0.174323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0727991 0.171712 0 3.62156 336.948

CAGE analysis