Hb_012395_090

Information

Type -
Description -
Location Contig12395: 38546-39767
Sequence    

Annotation

kegg
ID rcu:RCOM_1217860
description hypothetical protein
nr
ID XP_012069902.1
description PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
swissprot
ID Q9SL05
description Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1
trembl
ID A0A067KW60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02380 PE=4 SV=1
Gene Ontology
ID GO:0009534
description protein proton gradient regulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07264: 38643-39811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_090 0.0 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
2 Hb_011013_040 0.0477031268 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
3 Hb_002702_010 0.050121799 - - carbohydrate binding protein, putative [Ricinus communis]
4 Hb_000155_020 0.0594105817 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001942_010 0.0680178984 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
6 Hb_004223_150 0.0686399715 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
7 Hb_001159_050 0.0703102952 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
8 Hb_002007_220 0.0749876718 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_000046_120 0.075254577 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
10 Hb_010136_010 0.0797320717 - - Putative receptor-like protein kinase [Glycine soja]
11 Hb_001266_010 0.082232537 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
12 Hb_018591_020 0.0884508134 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_029695_090 0.0886851899 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
14 Hb_007597_030 0.0889897835 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000020_090 0.0890033165 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
16 Hb_002272_210 0.0890731076 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
17 Hb_003623_080 0.0894368752 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
18 Hb_003435_030 0.0900104935 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_033363_040 0.0909287577 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
20 Hb_003038_230 0.0935350048 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_090 Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_012395_090--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_012395_090--Hb_002702_010 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_004223_150 Hb_004223_150 Hb_012395_090--Hb_004223_150 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_011013_040--Hb_000155_020 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_011013_040--Hb_002702_010 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_002702_010--Hb_004223_150 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_000155_020--Hb_001159_050 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_010136_010 Hb_010136_010 Hb_000155_020--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_000155_020--Hb_004017_030 Hb_001942_010--Hb_000046_120 Hb_003435_030 Hb_003435_030 Hb_001942_010--Hb_003435_030 Hb_001942_010--Hb_011013_040 Hb_001942_010--Hb_010136_010 Hb_004223_150--Hb_001266_010 Hb_029695_090 Hb_029695_090 Hb_004223_150--Hb_029695_090 Hb_000881_020 Hb_000881_020 Hb_004223_150--Hb_000881_020 Hb_000608_270 Hb_000608_270 Hb_004223_150--Hb_000608_270 Hb_001424_010 Hb_001424_010 Hb_001159_050--Hb_001424_010 Hb_000025_700 Hb_000025_700 Hb_001159_050--Hb_000025_700 Hb_002272_210 Hb_002272_210 Hb_001159_050--Hb_002272_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102948 35.1046 227.141 129.375 0.213783 0.36513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31038 0.629609 0 4.71267 236.32

CAGE analysis