Hb_003038_230

Information

Type -
Description -
Location Contig3038: 128961-131661
Sequence    

Annotation

kegg
ID egr:104419716
description mannan endo-1,4-beta-mannosidase 7
nr
ID XP_012092731.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
swissprot
ID Q9FJZ3
description Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1
trembl
ID A0A067LBI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22175 PE=3 SV=1
Gene Ontology
ID GO:0016787
description glycosyl hydrolase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32054: 129555-129992 , PASA_asmbl_32055: 130420-131322 , PASA_asmbl_32056: 130437-130723 , PASA_asmbl_32057: 131364-131642 , PASA_asmbl_32058: 131645-132116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_230 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
2 Hb_001266_010 0.0682547057 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
3 Hb_001975_120 0.0700124828 - - chlorophyll a/b binding protein type II [Glycine max]
4 Hb_011013_040 0.0712277941 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
5 Hb_001424_010 0.0735397865 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_000697_030 0.0754020719 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
7 Hb_001159_050 0.0779358876 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
8 Hb_000608_270 0.0784473646 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004411_010 0.0795489453 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
10 Hb_000530_040 0.0796242097 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
11 Hb_000005_060 0.0828857371 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
12 Hb_000069_440 0.084099305 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
13 Hb_179129_010 0.0841860341 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
14 Hb_000962_090 0.0855834065 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
15 Hb_016371_010 0.0856044543 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_000155_020 0.0888380256 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000069_220 0.0900702222 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
18 Hb_000282_020 0.0903744729 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
19 Hb_009476_030 0.0919294829 - - fatty acid desaturase [Manihot esculenta]
20 Hb_078954_030 0.0926087447 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003038_230 Hb_003038_230 Hb_001266_010 Hb_001266_010 Hb_003038_230--Hb_001266_010 Hb_001975_120 Hb_001975_120 Hb_003038_230--Hb_001975_120 Hb_011013_040 Hb_011013_040 Hb_003038_230--Hb_011013_040 Hb_001424_010 Hb_001424_010 Hb_003038_230--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_003038_230--Hb_000697_030 Hb_001159_050 Hb_001159_050 Hb_003038_230--Hb_001159_050 Hb_000005_060 Hb_000005_060 Hb_001266_010--Hb_000005_060 Hb_034235_010 Hb_034235_010 Hb_001266_010--Hb_034235_010 Hb_001266_010--Hb_011013_040 Hb_001266_010--Hb_001975_120 Hb_000069_440 Hb_000069_440 Hb_001266_010--Hb_000069_440 Hb_009476_030 Hb_009476_030 Hb_001266_010--Hb_009476_030 Hb_000530_040 Hb_000530_040 Hb_001975_120--Hb_000530_040 Hb_001975_120--Hb_000697_030 Hb_005345_020 Hb_005345_020 Hb_001975_120--Hb_005345_020 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_001975_120--Hb_009476_030 Hb_001975_120--Hb_001424_010 Hb_012395_090 Hb_012395_090 Hb_011013_040--Hb_012395_090 Hb_000155_020 Hb_000155_020 Hb_011013_040--Hb_000155_020 Hb_002702_010 Hb_002702_010 Hb_011013_040--Hb_002702_010 Hb_011013_040--Hb_001159_050 Hb_001424_010--Hb_000530_040 Hb_078954_030 Hb_078954_030 Hb_001424_010--Hb_078954_030 Hb_179129_010 Hb_179129_010 Hb_001424_010--Hb_179129_010 Hb_001424_010--Hb_000697_030 Hb_016371_010 Hb_016371_010 Hb_001424_010--Hb_016371_010 Hb_000025_700 Hb_000025_700 Hb_001424_010--Hb_000025_700 Hb_000069_220 Hb_000069_220 Hb_000697_030--Hb_000069_220 Hb_000697_030--Hb_003573_030 Hb_000697_030--Hb_000530_040 Hb_004411_010 Hb_004411_010 Hb_000697_030--Hb_004411_010 Hb_001159_050--Hb_000155_020 Hb_001159_050--Hb_001424_010 Hb_001159_050--Hb_000025_700 Hb_002272_210 Hb_002272_210 Hb_001159_050--Hb_002272_210 Hb_001159_050--Hb_012395_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244102 0.211715 2.09702 0.837484 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0141123 1.73871

CAGE analysis